KEGG   PATHWAY: nara03030
Entry
nara03030                   Pathway                                
Name
DNA replication - Natrialbaceae archaeon AArc-T1-2
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nara03030  DNA replication
nara03030

Organism
Natrialbaceae archaeon AArc-T1-2 [GN:nara]
Gene
QQ977_04525  dnaG; DNA primase DnaG [KO:K02316] [EC:2.7.7.101]
QQ977_10120  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
QQ977_14110  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
QQ977_06255  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
QQ977_02500  DNA polymerase domain-containing protein [KO:K02319] [EC:2.7.7.7]
QQ977_16605  type B DNA-directed DNA polymerase [KO:K02319] [EC:2.7.7.7]
QQ977_07380  DNA-directed DNA polymerase II small subunit [KO:K02323] [EC:2.7.7.7]
QQ977_08110  DNA polymerase II large subunit [KO:K02322] [EC:2.7.7.7]
QQ977_06845  LAGLIDADG family homing endonuclease [KO:K10726] [EC:5.6.2.3]
QQ977_05425  priS; DNA primase small subunit PriS [KO:K02683] [EC:2.7.7.102]
QQ977_09110  priL; DNA primase regulatory subunit PriL [KO:K18882]
QQ977_06350  single-stranded DNA binding protein [KO:K07466]
QQ977_01255  hypothetical protein [KO:K04802]
QQ977_09095  DNA polymerase sliding clamp [KO:K04802]
QQ977_03685  replication factor C small subunit [KO:K04801]
QQ977_09855  AAA family ATPase [KO:K04801]
QQ977_11590  replication factor C large subunit [KO:K04800]
QQ977_13640  AAA domain-containing protein [KO:K10742] [EC:5.6.2.3 3.1.-.-]
QQ977_12080  fen; flap endonuclease-1 [KO:K04799] [EC:3.1.-.-]
QQ977_01325  ligA; ATP-dependent DNA ligase LigA [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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