KEGG   PATHWAY: nbc03030
Entry
nbc03030                    Pathway                                
Name
DNA replication - Neisseria bacilliformis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nbc03030  DNA replication
nbc03030

Organism
Neisseria bacilliformis [GN:nbc]
Gene
H3L91_05530  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
H3L91_11735  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
H3L91_01710  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
H3L91_07980  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
H3L91_05255  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
H3L91_08725  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
H3L91_00015  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
H3L91_02730  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
H3L91_06495  DNA primase [KO:K02316] [EC:2.7.7.101]
H3L91_03900  single-stranded DNA-binding protein [KO:K03111]
H3L91_11160  single-stranded DNA-binding protein [KO:K03111]
H3L91_10370  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
H3L91_01275  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
H3L91_06355  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
H3L91_09280  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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