KEGG   PATHWAY: nop03030
Entry
nop03030                    Pathway                                
Name
DNA replication - Nostoc sp. PCC 7524
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nop03030  DNA replication
nop03030

Organism
Nostoc sp. PCC 7524 [GN:nop]
Gene
Nos7524_2078  DNA-directed DNA polymerase III PolC [KO:K02337] [EC:2.7.7.7]
Nos7524_2850  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Nos7524_5087  DNA polymerase III, subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Nos7524_4016  DNA polymerase III, gamma/tau subunit [KO:K02341] [EC:2.7.7.7]
Nos7524_0574  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Nos7524_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Nos7524_5648  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Nos7524_2225  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Nos7524_5559  DNA primase [KO:K02316] [EC:2.7.7.101]
Nos7524_1380  single stranded DNA-binding protein [KO:K03111]
Nos7524_5351  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
Nos7524_4234  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Nos7524_2292  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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