KEGG   PATHWAY: npu00920
Entry
npu00920                    Pathway                                
Name
Sulfur metabolism - Nostoc punctiforme
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
npu00920  Sulfur metabolism
npu00920

Module
npu_M00021  Cysteine biosynthesis, serine => cysteine [PATH:npu00920]
npu_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:npu00920]
Other DBs
GO: 0006790
Organism
Nostoc punctiforme [GN:npu]
Gene
Npun_F5395  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
Npun_R4761  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
Npun_F5396  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
Npun_F5397  sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
Npun_R3718  sulfate ABC transporter, ATPase subunit [KO:K02045] [EC:7.3.2.3]
Npun_R0621  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Npun_F1216  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Npun_R5871  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Npun_R5868  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Npun_R5869  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Npun_R0644  transcriptional regulator, LysR family [KO:K15553]
Npun_F5883  binding-protein-dependent transport systems inner membrane component [KO:K15554]
Npun_F5884  ABC transporter related [KO:K15555] [EC:7.6.2.14]
Npun_F5882  aliphatic sulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Npun_R0625  luciferase family protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Npun_R1859  luciferase family protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Npun_F0761  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
Npun_F5448  sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
Npun_F0728  Ap4A phosphorylase II [KO:K00988] [EC:2.7.7.5 2.7.7.53]
Npun_R4678  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
Npun_F2380  inositol monophosphatase [KO:K01082] [EC:3.1.3.7]
Npun_R5591  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
Npun_F0818  sulfite reductase, ferredoxin dependent [KO:K00392] [EC:1.8.7.1]
Npun_R5269  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Npun_R0904  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Npun_F0539  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Npun_R5406  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Npun_R5750  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Npun_F0427  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Npun_F5408  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
Npun_F2809  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
Npun_R0343  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
Npun_F6516  Pyridoxal-5'-phosphate-dependent enzyme, beta subunit [KO:K01738] [EC:2.5.1.47]
Npun_R6426  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Npun_R0645  luciferase family protein [KO:K17228] [EC:1.14.14.35]
Npun_F0646  luciferase family protein [KO:K17228] [EC:1.14.14.35]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
npu00260  Glycine, serine and threonine metabolism
npu00270  Cysteine and methionine metabolism
npu00680  Methane metabolism
npu00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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