KEGG   PATHWAY: nsph00195
Entry
nsph00195                   Pathway                                
Name
Photosynthesis - Nodularia sphaerocarpa
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
nsph00195  Photosynthesis
nsph00195

Module
nsph_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:nsph00195]
nsph_M00161  Photosystem II [PATH:nsph00195]
nsph_M00163  Photosystem I [PATH:nsph00195]
Organism
Nodularia sphaerocarpa [GN:nsph]
Gene
BDGGKGIB_00928  psbA2_1; Photosystem II protein D1 2 [KO:K02703] [EC:1.10.3.9]
BDGGKGIB_01148  psbA2_2; Photosystem II protein D1 2 [KO:K02703] [EC:1.10.3.9]
BDGGKGIB_02390  psbA2_3; Photosystem II protein D1 2 [KO:K02703] [EC:1.10.3.9]
BDGGKGIB_04108  psbA2_4; Photosystem II protein D1 2 [KO:K02703] [EC:1.10.3.9]
BDGGKGIB_04252  psbA2_5; Photosystem II protein D1 2 [KO:K02703] [EC:1.10.3.9]
BDGGKGIB_04267  psbB; Photosystem II CP47 reaction center protein [KO:K02704]
BDGGKGIB_00593  psbC; Photosystem II CP43 reaction center protein [KO:K02705]
BDGGKGIB_00594  psbD_1; Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
BDGGKGIB_03359  psbD_2; Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
BDGGKGIB_02412  psbE; Cytochrome b559 subunit alpha [KO:K02707]
BDGGKGIB_02411  psbF; Cytochrome b559 subunit beta [KO:K02708]
BDGGKGIB_03180  psbH; Photosystem II reaction center protein H [KO:K02709]
BDGGKGIB_01673  psbK; Photosystem II reaction center protein K [KO:K02712]
BDGGKGIB_01675  psbM; Photosystem II reaction center protein M [KO:K02714]
BDGGKGIB_02400  psbO; Photosystem II manganese-stabilizing polypeptide [KO:K02716]
BDGGKGIB_03697  hypothetical protein [KO:K02717]
BDGGKGIB_04266  psbT; Photosystem II reaction center protein T [KO:K02718]
BDGGKGIB_00691  psbU; Photosystem II 12 kDa extrinsic protein [KO:K02719]
BDGGKGIB_04066  psbV; Cytochrome c-550 [KO:K02720]
BDGGKGIB_03542  psbY; Photosystem II protein Y [KO:K02723]
BDGGKGIB_02533  psbZ; Photosystem II reaction center protein Z [KO:K02724]
BDGGKGIB_02193  Photosystem II lipoprotein Psb27 [KO:K08902]
BDGGKGIB_02254  Photosystem II reaction center Psb28 protein [KO:K08903]
BDGGKGIB_00114  psaA; Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
BDGGKGIB_00113  psaB1; Photosystem I P700 chlorophyll a apoprotein A2 1 [KO:K02690] [EC:1.97.1.12]
BDGGKGIB_00785  psaC; Photosystem I iron-sulfur center [KO:K02691] [EC:1.97.1.12]
BDGGKGIB_02582  psaD; Photosystem I reaction center subunit II [KO:K02692]
BDGGKGIB_02259  psaE; Photosystem I reaction center subunit IV [KO:K02693]
BDGGKGIB_00359  psaF; Photosystem I reaction center subunit III [KO:K02694]
BDGGKGIB_00358  psaJ; Photosystem I reaction center subunit IX [KO:K02697]
BDGGKGIB_03258  psaK_1; Photosystem I reaction center subunit PsaK [KO:K02698]
BDGGKGIB_04217  psaK_2; Photosystem I reaction center subunit PsaK [KO:K02698]
BDGGKGIB_04218  psaK_3; Photosystem I reaction center subunit PsaK [KO:K02698]
BDGGKGIB_00357  psaL; Photosystem I reaction center subunit XI [KO:K02699]
BDGGKGIB_04504  psaM; Photosystem I reaction center subunit XII [KO:K02700]
BDGGKGIB_02453  psaX; Photosystem I 4.8 kDa protein [KO:K02702]
BDGGKGIB_00921  petA; Cytochrome f [KO:K02634]
BDGGKGIB_02497  petB_1; Cytochrome b6 [KO:K02635]
BDGGKGIB_00458  petC_1; Cytochrome b6-f complex iron-sulfur subunit [KO:K02636] [EC:7.1.1.6]
BDGGKGIB_00920  petC1; Cytochrome b6-f complex iron-sulfur subunit 1 [KO:K02636] [EC:7.1.1.6]
BDGGKGIB_01285  petC_2; Cytochrome b6-f complex iron-sulfur subunit [KO:K02636] [EC:7.1.1.6]
BDGGKGIB_02496  petD; Cytochrome b6-f complex subunit 4 [KO:K02637]
BDGGKGIB_01205  petL; Cytochrome b6-f complex subunit 6 [KO:K02642]
BDGGKGIB_02481  petM; Cytochrome b6-f complex subunit 7 [KO:K02643]
BDGGKGIB_04067  petE; Plastocyanin [KO:K02638]
BDGGKGIB_00166  fdxH; Ferredoxin, heterocyst [KO:K02639]
BDGGKGIB_01112  Ferredoxin [KO:K02639]
BDGGKGIB_03152  Ferredoxin-1 [KO:K02639]
BDGGKGIB_03993  Ferredoxin-1 [KO:K02639]
BDGGKGIB_03132  petH; Ferredoxin--NADP reductase [KO:K02641] [EC:1.18.1.2]
BDGGKGIB_03579  petJ_1; Cytochrome c6 [KO:K08906]
BDGGKGIB_03583  petJ_2; Cytochrome c6 [KO:K08906]
BDGGKGIB_01610  atpC; ATP synthase epsilon chain [KO:K02114]
BDGGKGIB_01609  atpD; ATP synthase subunit beta [KO:K02112] [EC:7.1.2.2 7.2.2.1]
BDGGKGIB_01267  atpG_2; ATP synthase gamma chain [KO:K02115]
BDGGKGIB_01266  atpA; ATP synthase subunit alpha [KO:K02111] [EC:7.1.2.2 7.2.2.1]
BDGGKGIB_01265  atpH; ATP synthase subunit delta [KO:K02113]
BDGGKGIB_01263  atpG_1; ATP synthase subunit b' [KO:K02109]
BDGGKGIB_01264  atpF; ATP synthase subunit b [KO:K02109]
BDGGKGIB_01262  atpE; ATP synthase subunit c [KO:K02110]
BDGGKGIB_01261  atpB; ATP synthase subunit a [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
nsph00196  Photosynthesis - antenna proteins
nsph00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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