KEGG   PATHWAY: ocr03018
Entry
ocr03018                    Pathway                                
Name
RNA degradation - Ochrobactrum sp. MT180101
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ocr03018  RNA degradation
ocr03018

Other DBs
GO: 0006401
Organism
Ochrobactrum sp. MT180101 [GN:ocr]
Gene
HGK82_10725  RNA pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
HGK82_04560  ribonuclease E/G [KO:K08300] [EC:3.1.26.12]
HGK82_05630  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
HGK82_12265  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
HGK82_05215  DEAD/DEAH box helicase [KO:K11927] [EC:5.6.2.7]
HGK82_20855  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
HGK82_13090  DEAD/DEAH box helicase [KO:K05592] [EC:5.6.2.7]
HGK82_11710  rho; transcription termination factor Rho [KO:K03628]
HGK82_23980  MBL fold metallo-hydrolase [KO:K12574] [EC:3.1.-.-]
HGK82_04100  ribonuclease J [KO:K12574] [EC:3.1.-.-]
HGK82_12035  dnaK; molecular chaperone DnaK [KO:K04043]
HGK82_18255  groL; chaperonin GroEL [KO:K04077] [EC:5.6.1.7]
HGK82_04890  hfq; RNA chaperone Hfq [KO:K03666]
HGK82_03475  RNA degradosome polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
HGK82_01180  ppk2; polyphosphate kinase 2 [KO:K22468] [EC:2.7.4.34]
HGK82_08380  CCA tRNA nucleotidyltransferase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
LinkDB

DBGET integrated database retrieval system