KEGG   PATHWAY: ome03030
Entry
ome03030                    Pathway                                
Name
DNA replication - Oleiphilus messinensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ome03030  DNA replication
ome03030

Organism
Oleiphilus messinensis [GN:ome]
Gene
OLMES_3037  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
OLMES_3743  exonuclease [KO:K02342] [EC:2.7.7.7]
OLMES_0285  exonuclease family protein [KO:K02342] [EC:2.7.7.7]
OLMES_3649  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
OLMES_3352  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
OLMES_3293  DNA polymerase III, delta'' subunit [KO:K02341] [EC:2.7.7.7]
OLMES_1859  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
OLMES_3591  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
OLMES_0002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
OLMES_1082  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
OLMES_4612  DNA primase [KO:K02316] [EC:2.7.7.101]
OLMES_0715  single-stranded DNA-binding protein [KO:K03111]
OLMES_3038  RNase H [KO:K03469] [EC:3.1.26.4]
OLMES_1984  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
OLMES_0963  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
OLMES_3421  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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