KEGG   PATHWAY: paeu03030
Entry
paeu03030                   Pathway                                
Name
DNA replication - Pseudomonas aeruginosa PA38182
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
paeu03030  DNA replication
paeu03030

Organism
Pseudomonas aeruginosa PA38182 [GN:paeu]
Gene
BN889_03584  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BN889_01956  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BN889_04031  dnaE_2; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BN889_04030  dnaE_1; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BN889_03309  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BN889_04435  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BN889_04262  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
BN889_00027  dnaN_1; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BN889_00028  dnaN_2; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BN889_05467  dnaB_1; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BN889_07319  DNA helicase [KO:K02314] [EC:5.6.2.3]
BN889_00669  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
BN889_04707  ssb_2; single-stranded DNA-binding protein [KO:K03111]
BN889_02142  ssb_1; single-stranded DNA-binding protein [KO:K03111]
BN889_07192  single-stranded DNA-binding protein [KO:K03111]
BN889_06470  single-stranded DNA-binding protein [KO:K03111]
BN889_06428  single-stranded DNA-binding protein [KO:K03111]
BN889_01955  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
BN889_04033  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
BN889_06103  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
BN889_01625  ligA_1; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
BN889_01626  ligA_2; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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