KEGG   PATHWAY: palo02010
Entry
palo02010                   Pathway                                
Name
ABC transporters - Paenibacillus algicola
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
palo02010  ABC transporters
palo02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Paenibacillus algicola [GN:palo]
Gene
E6C60_3243  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
E6C60_3246  sulfate ABC transporter inner membrane subunit [KO:K02046]
E6C60_3245  sulfate ABC transporter, inner membrane subunit [KO:K02047]
E6C60_3244  sulfate ABC transporter, ATPase subunit [KO:K02045] [EC:7.3.2.3]
E6C60_3999  ABC transporter-related protein [KO:K15555] [EC:7.6.2.14]
E6C60_2108  molybdenum ABC transporter periplasmic molybdate-binding protein [KO:K02020]
E6C60_2109  molybdate ABC transporter, permease protein [KO:K02018]
E6C60_3041  iron ABC transporter substrate-binding protein [KO:K02012]
E6C60_3040  ABC transporter permease [KO:K02011]
E6C60_2254  spermidine/putrescine ABC transporter, ATP-binding protein [KO:K02010] [EC:7.2.2.7]
E6C60_3039  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
E6C60_0191  family 1 extracellular solute-binding protein [KO:K11069]
E6C60_0190  inner membrane component of binding-protein-dependent transport system [KO:K11070]
E6C60_0189  binding-protein-dependent transport system inner membrane component [KO:K11071]
E6C60_0188  spermidine/putrescine ABC transporter ATPase subunit [KO:K11072] [EC:7.6.2.11]
E6C60_3311  Substrate-binding region of ABC-type glycine betaine transport system [KO:K02002]
E6C60_3310  binding-protein-dependent transport systems inner membrane component [KO:K02001]
E6C60_3309  glycine betaine/L-proline ABC transporter, ATPase subunit [KO:K02000] [EC:7.6.2.9]
E6C60_0138  ABC transporter, ATP-binding protein [KO:K10112] [EC:7.5.2.-]
E6C60_0717  extracellular solute-binding protein family 1 [KO:K15770]
E6C60_3038  extracellular solute-binding protein family 1 [KO:K15770]
E6C60_0718  binding-protein-dependent transport system inner membrane component [KO:K15771]
E6C60_0719  inner membrane component of binding-protein-dependent transport system [KO:K15772]
E6C60_0693  extracellular solute-binding protein family 1 [KO:K10117]
E6C60_0793  putative sugar ABC transporter [KO:K10117]
E6C60_1397  sugar ABC transporter substrate-binding protein [KO:K10117]
E6C60_0794  putative ABC-type sugar transport system, permease component [KO:K10118]
E6C60_1396  binding-protein-dependent transporters inner membrane component [KO:K10118]
E6C60_0795  putative ABC transporter permease protein [KO:K10119]
E6C60_1395  sugar ABC transporter permease [KO:K10119]
E6C60_0180  extracellular solute-binding protein [KO:K17318]
E6C60_0234  extracellular solute-binding protein, family 1 [KO:K17318]
E6C60_0236  extracellular solute-binding protein, family 1 [KO:K17318]
E6C60_0238  extracellular solute-binding protein, family 1 [KO:K17318]
E6C60_0314  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_0407  ABC transporter, solute-binding protein [KO:K17318]
E6C60_0766  hypothetical protein [KO:K17318]
E6C60_0769  extracellular solute-binding protein, family 1 [KO:K17318]
E6C60_0788  putative multiple sugar transport system substrate-binding protein YtcQ [KO:K17318]
E6C60_0817  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_0818  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_0822  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_0842  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_1012  family 1 extracellular solute-binding protein [KO:K17318]
E6C60_1207  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_1319  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_1323  hypothetical protein [KO:K17318]
E6C60_1587  family 1 extracellular solute-binding protein [KO:K17318]
E6C60_2664  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_2982  ABC transporter, solute-binding protein [KO:K17318]
E6C60_3148  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_3337  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_3617  extracellular solute-binding protein family 1 [KO:K17318]
E6C60_4046  putative multiple sugar transport system substrate-binding protein YtcQ [KO:K17318]
E6C60_2915  family 1 extracellular solute-binding protein [KO:K17318]
E6C60_2943  sugar ABC transporter substrate-binding protein [KO:K17318]
E6C60_0178  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_0232  binding-protein-dependent transport system inner membrane component [KO:K17319]
E6C60_0312  hypothetical protein [KO:K17319]
E6C60_0408  binding-protein-dependent transport system inner membrane component [KO:K17319]
E6C60_0757  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_0770  ABC transporter, permease protein [KO:K17319]
E6C60_0786  putative permease [KO:K17319]
E6C60_0815  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_0840  binding-protein-dependent transporters inner membrane component [KO:K17319]
E6C60_1013  polysaccharide ABC transporter permease [KO:K17319]
E6C60_1205  ABC transporter, permease protein [KO:K17319]
E6C60_1317  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_1321  binding-protein-dependent transport system inner membrane component [KO:K17319]
E6C60_1588  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_2666  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_2917  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_2945  sugar ABC transporter permease [KO:K17319]
E6C60_2984  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_3150  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_3339  binding-protein-dependent transport systems inner membrane component [KO:K17319]
E6C60_0179  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_0233  sugar ABC transporter permease [KO:K17320]
E6C60_0313  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_0409  inner membrane component of binding-protein-dependent transport system [KO:K17320]
E6C60_0771  binding-protein-dependent transporters inner membrane component [KO:K17320]
E6C60_0787  YtcP3 [KO:K17320]
E6C60_0816  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_0841  binding-protein-dependent transporters inner membrane component [KO:K17320]
E6C60_1014  polysaccharide ABC transporter permease [KO:K17320]
E6C60_1206  protein LplC [KO:K17320]
E6C60_1318  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_1322  protein LplC [KO:K17320]
E6C60_1589  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_2665  protein LplC [KO:K17320]
E6C60_2983  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_3149  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_3338  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_0758  putative protein LplC [KO:K17320]
E6C60_2916  binding-protein-dependent transport systems inner membrane component [KO:K17320]
E6C60_2944  sugar ABC transporter permease [KO:K17320]
E6C60_0884  sugar ABC transporter substrate-binding protein [KO:K10236]
E6C60_0358  sugar ABC transporter periplasmic protein [KO:K10240]
E6C60_0362  extracellular solute-binding protein family 1 [KO:K10240]
E6C60_0689  extracellular solute-binding protein family 1 [KO:K10240]
E6C60_0357  binding-protein-dependent transporters inner membrane component [KO:K10241]
E6C60_0690  binding-protein-dependent transport system inner membrane component [KO:K10241]
E6C60_0356  binding-protein-dependent transporters inner membrane component [KO:K10242]
E6C60_0691  inner membrane component of binding-protein-dependent transport system [KO:K10242]
E6C60_0882  sugar ABC transporter permease [KO:K17245]
E6C60_0343  basic membrane lipoprotein [KO:K07335]
E6C60_1036  basic membrane lipoprotein [KO:K07335]
E6C60_0345  inner-membrane translocator [KO:K23535]
E6C60_1038  branched-chain amino acid ABC transporter, permease protein [KO:K23535]
E6C60_0346  inner-membrane translocator [KO:K23536]
E6C60_1039  branched-chain amino acid ABC transporter, permease protein [KO:K23536]
E6C60_0344  ABC transporter related protein [KO:K23537]
E6C60_1037  ABC transporter-like protein [KO:K23537]
E6C60_0590  periplasmic-binding protein/LacI transcriptional regulator [KO:K10439]
E6C60_0589  ribose transport system permease protein RbsC [KO:K10440]
E6C60_0588  ABC transporter related protein [KO:K10441] [EC:7.5.2.7]
E6C60_0587  RbsD or FucU transport [KO:K06726] [EC:5.4.99.62]
E6C60_2122  ABC transporter, solute-binding protein [KO:K05813]
E6C60_3292  ABC transporter, solute-binding protein [KO:K05813]
E6C60_2124  inner membrane component of binding-protein-dependent transport system [KO:K05814]
E6C60_3291  ABC transporter, permease protein [KO:K05814]
E6C60_2123  binding-protein-dependent transport system inner membrane component [KO:K05815]
E6C60_3290  ABC transporter, permease protein [KO:K05815]
E6C60_1937  phosphate binding protein [KO:K02040]
E6C60_2858  phosphate binding protein [KO:K02040]
E6C60_1938  phosphate ABC transporter, permease protein PstC [KO:K02037]
E6C60_2857  phosphate ABC transporter permease pstc [KO:K02037]
E6C60_1939  phosphate ABC transporter, inner membrane subunit PstA [KO:K02038]
E6C60_2856  ABC transporter permease [KO:K02038]
E6C60_1940  phosphate ABC transporter ATPase [KO:K02036] [EC:7.3.2.1]
E6C60_2844  phosphate ABC transporter ATPase subunit [KO:K02036] [EC:7.3.2.1]
E6C60_2855  phosphate ABC transporter ATPase [KO:K02036] [EC:7.3.2.1]
E6C60_0986  phosphonate ABC transporter, periplasmic phosphonate-binding protein [KO:K02044]
E6C60_0988  ABC-type phosphate/phosphonate transport system, permease component [KO:K02042]
E6C60_0989  phosphonate ABC transporter, inner membrane subunit [KO:K02042]
E6C60_0987  phosphonate ABC transporter, ATPase subunit [KO:K02041] [EC:7.3.2.2]
E6C60_2082  ABC transporter-like protein [KO:K02041] [EC:7.3.2.2]
E6C60_2233  polar amino acid ABC transporter inner membrane subunit [KO:K10036 K10037]
E6C60_2232  ABC transporter related protein [KO:K10038] [EC:7.4.2.1]
E6C60_2091  polar amino acid ABC transporter, inner membrane subunit [KO:K17077 K23059]
E6C60_2092  ABC transporter related protein [KO:K23060] [EC:7.4.2.1]
E6C60_1131  NLPA lipoprotein [KO:K02073]
E6C60_3461  lipoprotein, YaeC family [KO:K02073]
E6C60_1130  binding-protein-dependent transport systems inner membrane component [KO:K02072]
E6C60_3462  binding-protein-dependent transport systems inner membrane component [KO:K02072]
E6C60_1129  ABC transporter, ATP-binding protein [KO:K02071]
E6C60_3463  ABC transporter related protein [KO:K02071]
E6C60_1506  putative periplasmic oligopeptide-binding protein [KO:K15580]
E6C60_1507  binding-protein-dependent transport systems inner membrane component [KO:K15581]
E6C60_1508  inner membrane component of binding-protein-dependent transport system [KO:K15582]
E6C60_1509  oligopeptide/dipeptide ABC transporter, ATPase subunit [KO:K15583]
E6C60_1510  ABC transporter related protein [KO:K10823]
E6C60_2221  ABC transporter substrate-binding protein [KO:K15584]
E6C60_2220  ABC transporter permease [KO:K15585]
E6C60_2219  ABC transporter permease [KO:K15586]
E6C60_2218  ABC transporter ATP-binding protein [KO:K15587] [EC:7.2.2.11]
E6C60_2217  ABC transporter-like protein [KO:K10824] [EC:7.2.2.11]
E6C60_2673  periplasmic-binding protein [KO:K23227]
E6C60_2672  iron-hydroxamate transporter permease subunit [KO:K23228]
E6C60_1724  ABC transporter, substrate-binding protein [KO:K09815]
E6C60_2294  metal ABC transporter periplasmic protein/surface adhesin [KO:K09815]
E6C60_1726  ABC-3 protein [KO:K09816]
E6C60_2295  manganese/zinc ABC transporter permease [KO:K09816]
E6C60_1725  ABC transporter related protein [KO:K09817] [EC:7.2.2.20]
E6C60_2296  zinc ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
E6C60_2153  periplasmic solute binding protein [KO:K11707]
E6C60_2155  ABC-3 protein [KO:K11708]
E6C60_2156  ABC-3 protein [KO:K11709]
E6C60_2154  putative manganese transport system ATP-binding protein MntA [KO:K11710] [EC:7.2.2.5]
E6C60_0614  cobalt transport protein [KO:K16785]
E6C60_3409  cobalt transport protein [KO:K16785]
E6C60_3793  ABC transporter [KO:K09690]
E6C60_3792  teichoic-acid-transporting AtPase [KO:K09691] [EC:7.5.2.14]
E6C60_0459  permease [KO:K20461]
E6C60_0460  hypothetical protein [KO:K20461]
E6C60_0458  ABC transporter-like protein [KO:K20459]
E6C60_3972  putative membrane protein [KO:K19341]
E6C60_3973  putative ABC transporter ATP-binding protein [KO:K19340]
E6C60_3821  protein of unknown function DUF214 [KO:K09811]
E6C60_3822  cell division ATP-binding protein FtsE [KO:K09812]
E6C60_0829  ABC transporter [KO:K18889]
E6C60_1921  ABC transporter related protein [KO:K18889]
E6C60_2405  ABC transporter related protein [KO:K18889]
E6C60_0830  ABC transporter [KO:K18890]
E6C60_1922  ABC transporter related protein [KO:K18890]
E6C60_2406  ABC transporter related protein [KO:K18890]
E6C60_1117  ABC transporter related protein [KO:K18887]
E6C60_3975  ABC transporter-like protein [KO:K18887]
E6C60_0391  bacteriocin-processing peptidase [KO:K18888]
E6C60_1118  ABC transporter related protein [KO:K18888]
E6C60_3974  ABC transporter related protein [KO:K18888]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
PMID:18424520
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
PMID:18375759
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
PMID:10557362
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
PMID:11731493
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
PMID:16135226
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
PMID:11929526
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
PMID:18326572
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
PMID:16109926
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
PMID:17873039
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
PMID:17214741
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
PMID:18805970
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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