KEGG   PATHWAY: parb00920
Entry
parb00920                   Pathway                                
Name
Sulfur metabolism - Paraburkholderia aromaticivorans
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
parb00920  Sulfur metabolism
parb00920

Module
parb_M00021  Cysteine biosynthesis, serine => cysteine [PATH:parb00920]
parb_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:parb00920]
Other DBs
GO: 0006790
Organism
Paraburkholderia aromaticivorans [GN:parb]
Gene
CJU94_04300  thiosulfate transporter subunit [KO:K02048]
CJU94_16310  sulfate transporter subunit [KO:K23163]
CJU94_16305  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CJU94_16300  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CJU94_16295  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
CJU94_04030  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
CJU94_25830  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
CJU94_04020  taurine ABC transporter permease [KO:K15552]
CJU94_25840  taurine ABC transporter permease [KO:K15552]
CJU94_04025  nitrate ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
CJU94_25835  nitrate ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
CJU94_31750  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
CJU94_11825  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CJU94_20810  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
CJU94_17725  ABC transporter substrate-binding protein [KO:K15553]
CJU94_14775  nitrate ABC transporter substrate-binding protein [KO:K15553]
CJU94_28605  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
CJU94_17295  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CJU94_31755  nitrate ABC transporter substrate-binding protein [KO:K15553]
CJU94_35375  myristoyl transferase [KO:K15553]
CJU94_27060  nitrate ABC transporter substrate-binding protein [KO:K15553]
CJU94_16010  ABC transporter substrate-binding protein [KO:K15553]
CJU94_35350  myristoyl transferase [KO:K15553]
CJU94_14800  ABC transporter substrate-binding protein [KO:K15553]
CJU94_18265  ABC transporter substrate-binding protein [KO:K15553]
CJU94_14825  nitrate ABC transporter substrate-binding protein [KO:K15553]
CJU94_11835  ABC transporter permease [KO:K15554]
CJU94_16455  ABC transporter permease [KO:K15554]
CJU94_17730  ABC transporter permease [KO:K15554]
CJU94_14765  taurine ABC transporter permease [KO:K15554]
CJU94_14770  sulfonate ABC transporter [KO:K15554]
CJU94_14835  ABC transporter permease [KO:K15554]
CJU94_35360  ABC transporter permease [KO:K15554]
CJU94_14790  ABC transporter permease [KO:K15554]
CJU94_16000  ABC transporter permease [KO:K15554]
CJU94_27070  ABC transporter permease [KO:K15554]
CJU94_11830  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CJU94_16450  aliphatic sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CJU94_17735  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CJU94_14760  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CJU94_14830  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CJU94_14795  ABC transporter [KO:K15555] [EC:7.6.2.14]
CJU94_35355  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
CJU94_16005  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
CJU94_27065  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
CJU94_11815  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CJU94_16460  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CJU94_21890  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CJU94_17325  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CJU94_23950  FMN reductase [KO:K00299] [EC:1.5.1.38]
CJU94_01395  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
CJU94_01400  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
CJU94_11900  phosphorylase [KO:K00988] [EC:2.7.7.5 2.7.7.53]
CJU94_16380  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CJU94_01925  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CJU94_01405  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
CJU94_21010  formate dehydrogenase [KO:K21307] [EC:1.8.5.6]
CJU94_21015  (Fe-S)-binding protein [KO:K21308]
CJU94_21020  DMSO reductase [KO:K21309]
CJU94_14805  soxC; sulfite dehydrogenase [KO:K17225]
CJU94_14810  cytochrome C biogenesis protein CcdA [KO:K22622] [EC:1.8.2.6]
CJU94_15065  reductase [KO:K00380] [EC:1.8.1.2]
CJU94_33335  NADPH flavoprotein [KO:K00380] [EC:1.8.1.2]
CJU94_01415  sulfite reductase [KO:K00381] [EC:1.8.1.2]
CJU94_35200  nitrite reductase [KO:K00381] [EC:1.8.1.2]
CJU94_38400  pyridine nucleotide-disulfide oxidoreductase [KO:K17218] [EC:1.8.5.4]
CJU94_25975  TIGR01244 family protein [KO:K17218] [EC:1.8.5.4]
CJU94_38395  Zn-dependent hydrolase [KO:K17725] [EC:1.13.11.18]
CJU94_29515  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CJU94_12555  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
CJU94_32365  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
CJU94_21830  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
CJU94_26345  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
CJU94_17190  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
CJU94_17180  cysteine synthase [KO:K01738] [EC:2.5.1.47]
CJU94_04840  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CJU94_39805  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CJU94_34030  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CJU94_29290  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
CJU94_14840  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
CJU94_38150  2Fe-2S ferredoxin [KO:K15762]
CJU94_38165  oxidoreductase [KO:K15765] [EC:1.18.1.3]
CJU94_27545  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
CJU94_03565  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
CJU94_15365  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
CJU94_29610  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
CJU94_27550  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
CJU94_10020  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
CJU94_02955  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
parb00260  Glycine, serine and threonine metabolism
parb00270  Cysteine and methionine metabolism
parb00680  Methane metabolism
parb00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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