KEGG   PATHWAY: pch00920
Entry
pch00920                    Pathway                                
Name
Sulfur metabolism - Pseudomonas chlororaphis PA23
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pch00920  Sulfur metabolism
pch00920

Module
pch_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pch00920]
pch_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pch00920]
Other DBs
GO: 0006790
Organism
Pseudomonas chlororaphis PA23 [GN:pch]
Gene
EY04_07975  thiosulfate transporter subunit [KO:K02048]
EY04_00445  ABC transporter permease [KO:K23163]
EY04_00455  sulfate ABC transporter permease [KO:K02046]
EY04_00460  sulfate ABC transporter permease [KO:K02047]
EY04_00465  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
EY04_00795  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
EY04_00785  taurine ABC transporter permease [KO:K15552]
EY04_00790  tauB; taurine transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
EY04_00780  taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
EY04_00505  nitrate ABC transporter substrate-binding protein [KO:K15553]
EY04_15985  sulfonate ABC transporter substrate-binding protein [KO:K15553]
EY04_11545  ABC transporter substrate-binding protein [KO:K15553]
EY04_15440  ABC transporter substrate-binding protein [KO:K15553]
EY04_15450  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
EY04_30990  ABC transporter substrate-binding protein [KO:K15553]
EY04_15980  sulfonate ABC transporter substrate-binding protein [KO:K15553]
EY04_16415  sulfonate ABC transporter substrate-binding protein [KO:K15553]
EY04_00130  nitrate ABC transporter substrate-binding protein [KO:K15553]
EY04_00500  ABC transporter permease [KO:K15554]
EY04_15990  ABC transporter permease [KO:K15554]
EY04_15410  ABC transporter permease [KO:K15554]
EY04_31000  ssuC; alkanesulfonate transporter permease subunit [KO:K15554]
EY04_00140  ABC transporter permease [KO:K15554]
EY04_00495  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EY04_15995  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EY04_15405  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EY04_31005  ssuB; aliphatic sulfonates transport ATP-binding subunit [KO:K15555] [EC:7.6.2.14]
EY04_00135  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
EY04_15415  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EY04_21105  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EY04_30995  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
EY04_21100  FMN reductase [KO:K00299] [EC:1.5.1.38]
EY04_30985  NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
EY04_04080  adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
EY04_04075  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
EY04_00225  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
EY04_01965  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
EY04_00925  adenosine-3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
EY04_08895  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
EY04_03675  flavodoxin [KO:K00380] [EC:1.8.1.2]
EY04_10740  nitric oxide synthase [KO:K00380] [EC:1.8.1.2]
EY04_13480  sulfite reductase [KO:K00381] [EC:1.8.1.2]
EY04_18880  sulfite reductase [KO:K00381] [EC:1.8.1.2]
EY04_14760  oxidoreductase [KO:K16951]
EY04_11685  pyridine nucleotide-disulfide oxidoreductase [KO:K17218] [EC:1.8.5.4]
EY04_02085  thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
EY04_31305  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
EY04_32330  sulfurtransferase [KO:K02439] [EC:2.8.1.1]
EY04_00725  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
EY04_25285  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
EY04_05890  cysteine synthase [KO:K01738] [EC:2.5.1.47]
EY04_07045  cysteine synthase [KO:K01738] [EC:2.5.1.47]
EY04_31410  metX; homoserine acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
EY04_09755  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
EY04_16535  alkanesulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
EY04_10100  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
EY04_32165  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
EY04_10095  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
EY04_32170  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
EY04_32155  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pch00260  Glycine, serine and threonine metabolism
pch00270  Cysteine and methionine metabolism
pch00680  Methane metabolism
pch00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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