KEGG   PATHWAY: pkm03030
Entry
pkm03030                    Pathway                                
Name
DNA replication - Pseudomonas kermanshahensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pkm03030  DNA replication
pkm03030

Organism
Pseudomonas kermanshahensis [GN:pkm]
Gene
PZ739_19245  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
PZ739_01815  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
PZ739_05735  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
PZ739_19860  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
PZ739_07505  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
PZ739_24685  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
PZ739_04840  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
PZ739_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
PZ739_25080  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
PZ739_02005  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
PZ739_02525  single-stranded DNA-binding protein [KO:K03111]
PZ739_19275  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
PZ739_05730  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
PZ739_00485  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
PZ739_19920  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
PZ739_25530  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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