KEGG   PATHWAY: ppw02010
Entry
ppw02010                    Pathway                                
Name
ABC transporters - Pseudomonas putida W619
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
ppw02010  ABC transporters
ppw02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas putida W619 [GN:ppw]
Gene
PputW619_0095  [KO:K02002]
PputW619_0132  [KO:K11073]
PputW619_0145  [KO:K02040]
PputW619_0146  [KO:K02037]
PputW619_0147  [KO:K02038]
PputW619_0148  [KO:K02036] [EC:7.3.2.1]
PputW619_0187  [KO:K12368]
PputW619_0282  [KO:K11073]
PputW619_0283  [KO:K11073]
PputW619_0284  [KO:K11076] [EC:7.6.2.16]
PputW619_0285  [KO:K11075]
PputW619_0286  [KO:K11074]
PputW619_0291  [KO:K23163]
PputW619_0292  [KO:K02046]
PputW619_0293  [KO:K02047]
PputW619_0294  [KO:K02045] [EC:7.3.2.3]
PputW619_0300  [KO:K02073]
PputW619_0308  [KO:K02424]
PputW619_0328  [KO:K02010] [EC:7.2.2.7]
PputW619_0329  [KO:K02011]
PputW619_0330  [KO:K02012]
PputW619_0355  [KO:K09812]
PputW619_0356  [KO:K09811]
PputW619_0531  [KO:K11085] [EC:7.5.2.6]
PputW619_0577  [KO:K06858]
PputW619_0904  [KO:K09969]
PputW619_0905  [KO:K09970]
PputW619_0906  [KO:K09971]
PputW619_0907  [KO:K09972] [EC:7.4.2.1]
PputW619_1097  [KO:K10004] [EC:7.4.2.1]
PputW619_1098  [KO:K10002]
PputW619_1099  [KO:K10003]
PputW619_1100  [KO:K10001]
PputW619_1107  [KO:K02010] [EC:7.2.2.7]
PputW619_1154  [KO:K01996]
PputW619_1155  [KO:K01995]
PputW619_1156  [KO:K01998]
PputW619_1157  [KO:K01997]
PputW619_1158  [KO:K01999]
PputW619_1291  [KO:K02002]
PputW619_1386  [KO:K09690]
PputW619_1387  [KO:K09691] [EC:7.5.2.14]
PputW619_1405  [KO:K12536]
PputW619_1671  [KO:K09808]
PputW619_1672  [KO:K09810] [EC:7.6.2.-]
PputW619_1673  [KO:K09808]
PputW619_1710  [KO:K02471]
PputW619_1733  [KO:K17324]
PputW619_1734  [KO:K17325]
PputW619_1735  [KO:K17322]
PputW619_1736  [KO:K17323]
PputW619_1738  [KO:K17321]
PputW619_1850  [KO:K11073]
PputW619_1956  [KO:K10439]
PputW619_1957  [KO:K10441] [EC:7.5.2.7]
PputW619_1958  [KO:K10440]
PputW619_1961  [KO:K06726] [EC:5.4.99.62]
PputW619_2038  [KO:K10111] [EC:7.5.2.-]
PputW619_2039  [KO:K10229]
PputW619_2040  [KO:K10228]
PputW619_2041  [KO:K10227]
PputW619_2088  [KO:K09816]
PputW619_2089  [KO:K09817] [EC:7.2.2.20]
PputW619_2090  [KO:K09815]
PputW619_2163  [KO:K01995 K01996 K01998]
PputW619_2164  [KO:K01997]
PputW619_2165  [KO:K01999]
PputW619_2169  [KO:K18893]
PputW619_2293  [KO:K02000] [EC:7.6.2.9]
PputW619_2294  [KO:K02001]
PputW619_2295  [KO:K02002]
PputW619_2713  [KO:K13893]
PputW619_2714  [KO:K13894]
PputW619_2715  [KO:K13895]
PputW619_2898  [KO:K11073]
PputW619_2990  [KO:K23537]
PputW619_2991  [KO:K23535]
PputW619_2992  [KO:K23536]
PputW619_2993  [KO:K07335]
PputW619_3005  [KO:K15584]
PputW619_3006  [KO:K15585]
PputW619_3007  [KO:K15586]
PputW619_3008  [KO:K15587] [EC:7.2.2.11]
PputW619_3009  [KO:K10824] [EC:7.2.2.11]
PputW619_3061  [KO:K02040]
PputW619_3165  [KO:K02073]
PputW619_3197  [KO:K02020]
PputW619_3198  [KO:K02018]
PputW619_3199  [KO:K02017] [EC:7.3.2.5]
PputW619_3271  [KO:K11072] [EC:7.6.2.11]
PputW619_3272  [KO:K11070]
PputW619_3273  [KO:K11071]
PputW619_3274  [KO:K11069]
PputW619_3471  [KO:K13893]
PputW619_3472  [KO:K13893]
PputW619_3473  [KO:K13894]
PputW619_3474  [KO:K13895]
PputW619_3475  [KO:K13896]
PputW619_3534  [KO:K05685] [EC:7.6.2.-]
PputW619_3540  [KO:K06160]
PputW619_3632  [KO:K02048]
PputW619_3650  [KO:K02196]
PputW619_3651  [KO:K02195]
PputW619_3652  [KO:K02194]
PputW619_3653  [KO:K02193] [EC:7.6.2.5]
PputW619_3772  [KO:K10025] [EC:7.4.2.1]
PputW619_3773  [KO:K10023]
PputW619_3774  [KO:K10024]
PputW619_3775  [KO:K10022]
PputW619_3810  [KO:K12541]
PputW619_3836  [KO:K18893]
PputW619_4206  [KO:K10112] [EC:7.5.2.-]
PputW619_4207  [KO:K17317]
PputW619_4208  [KO:K17316]
PputW619_4209  [KO:K17315]
PputW619_4235  [KO:K11720]
PputW619_4236  [KO:K07091]
PputW619_4253  [KO:K07122]
PputW619_4254  [KO:K07323]
PputW619_4255  [KO:K02067]
PputW619_4256  [KO:K02066]
PputW619_4257  [KO:K02065]
PputW619_4262  [KO:K06861] [EC:7.5.2.5]
PputW619_4293  [KO:K12368]
PputW619_4294  [KO:K12368]
PputW619_4296  [KO:K12368]
PputW619_4297  [KO:K12369]
PputW619_4298  [KO:K12370]
PputW619_4299  [KO:K12371]
PputW619_4300  [KO:K12372]
PputW619_4305  [KO:K11073]
PputW619_4307  [KO:K05846]
PputW619_4308  [KO:K05845]
PputW619_4309  [KO:K05846]
PputW619_4310  [KO:K05847] [EC:7.6.2.9]
PputW619_4359  [KO:K02042]
PputW619_4360  [KO:K02042]
PputW619_4361  [KO:K02041] [EC:7.3.2.2]
PputW619_4362  [KO:K02044]
PputW619_4382  [KO:K12541]
PputW619_4633  [KO:K11959]
PputW619_4634  [KO:K11960]
PputW619_4635  [KO:K11961]
PputW619_4636  [KO:K11962]
PputW619_4637  [KO:K11963]
PputW619_4655  [KO:K01996]
PputW619_4656  [KO:K01995]
PputW619_4657  [KO:K01998]
PputW619_4658  [KO:K01997]
PputW619_4659  [KO:K01999]
PputW619_4671  [KO:K02012]
PputW619_4672  [KO:K02011]
PputW619_4904  [KO:K02002]
PputW619_4912  [KO:K02002]
PputW619_4913  [KO:K02001]
PputW619_4914  [KO:K02000] [EC:7.6.2.9]
PputW619_4927  [KO:K23058]
PputW619_4928  [KO:K23055]
PputW619_4929  [KO:K23056]
PputW619_4930  [KO:K23057]
PputW619_4972  [KO:K15555] [EC:7.6.2.14]
PputW619_4973  [KO:K15554]
PputW619_4975  [KO:K15553]
PputW619_4979  [KO:K15551]
PputW619_4980  [KO:K10831] [EC:7.6.2.7]
PputW619_4981  [KO:K15552]
PputW619_4985  [KO:K02424]
PputW619_4986  [KO:K10009]
PputW619_4987  [KO:K10010] [EC:7.4.2.1]
PputW619_4991  [KO:K02073]
PputW619_4992  [KO:K02071]
PputW619_4993  [KO:K02072]
PputW619_5004  [KO:K15553]
PputW619_5005  [KO:K15554]
PputW619_5006  [KO:K15555] [EC:7.6.2.14]
PputW619_5009  [KO:K15555] [EC:7.6.2.14]
PputW619_5010  [KO:K15554]
PputW619_5011  [KO:K15553]
PputW619_5020  [KO:K02011]
PputW619_5021  [KO:K02012]
PputW619_5055  [KO:K15554]
PputW619_5056  [KO:K15555] [EC:7.6.2.14]
PputW619_5057  [KO:K15553]
PputW619_5062  [KO:K12541]
PputW619_5085  [KO:K02066]
PputW619_5086  [KO:K02065]
PputW619_5087  [KO:K02067]
PputW619_5108  [KO:K09815]
PputW619_5110  [KO:K09817] [EC:7.2.2.20]
PputW619_5111  [KO:K09816]
PputW619_5114  [KO:K02071]
PputW619_5115  [KO:K02072]
PputW619_5116  [KO:K02073]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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