KEGG   PATHWAY: psep02010
Entry
psep02010                   Pathway                                
Name
ABC transporters - Pseudomonas sessilinigenes
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
psep02010  ABC transporters
psep02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas sessilinigenes [GN:psep]
Gene
C4K39_0032  [KO:K02002]
C4K39_0076  [KO:K02073]
C4K39_0077  [KO:K02072]
C4K39_0078  [KO:K02071]
C4K39_0081  [KO:K09816]
C4K39_0082  [KO:K09817] [EC:7.2.2.20]
C4K39_0084  [KO:K09815]
C4K39_0104  [KO:K02067]
C4K39_0105  [KO:K02065]
C4K39_0106  [KO:K02066]
C4K39_0140  [KO:K12541]
C4K39_0205  [KO:K23163]
C4K39_0206  [KO:K02046]
C4K39_0207  [KO:K02047]
C4K39_0208  [KO:K02045] [EC:7.3.2.3]
C4K39_0214  [KO:K15555] [EC:7.6.2.14]
C4K39_0215  [KO:K15554]
C4K39_0216  [KO:K15553]
C4K39_0238  [KO:K02073]
C4K39_0250  [KO:K02072]
C4K39_0251  [KO:K02071]
C4K39_0252  [KO:K02073]
C4K39_0257  [KO:K10010] [EC:7.4.2.1]
C4K39_0258  [KO:K10009]
C4K39_0259  [KO:K02424]
C4K39_0274  [KO:K15552]
C4K39_0275  [KO:K10831] [EC:7.6.2.7]
C4K39_0276  [KO:K15551]
C4K39_0352  [KO:K23057]
C4K39_0353  [KO:K23056]
C4K39_0354  [KO:K23055]
C4K39_0355  [KO:K23058]
C4K39_0522  [KO:K11085] [EC:7.5.2.6]
C4K39_0568  [KO:K02011]
C4K39_0569  [KO:K02012]
C4K39_0591  [KO:K01999]
C4K39_0592  [KO:K01997]
C4K39_0593  [KO:K01998]
C4K39_0594  [KO:K01995]
C4K39_0595  [KO:K01996]
C4K39_0626  [KO:K11963]
C4K39_0627  [KO:K11962]
C4K39_0628  [KO:K11961]
C4K39_0629  [KO:K11960]
C4K39_0630  [KO:K11959]
C4K39_0879  [KO:K05847] [EC:7.6.2.9]
C4K39_0880  [KO:K05846]
C4K39_0881  [KO:K05845]
C4K39_0882  [KO:K05846]
C4K39_0885  [KO:K12372]
C4K39_0886  [KO:K12371]
C4K39_0887  [KO:K12370]
C4K39_0888  [KO:K12369]
C4K39_0889  [KO:K12368]
C4K39_0891  [KO:K12368]
C4K39_0892  [KO:K12368]
C4K39_0898  [KO:K02471]
C4K39_0932  [KO:K06861] [EC:7.5.2.5]
C4K39_0937  [KO:K02065]
C4K39_0938  [KO:K02066]
C4K39_0939  [KO:K02067]
C4K39_0940  [KO:K07323]
C4K39_0941  [KO:K07122]
C4K39_1051  [KO:K10022]
C4K39_1071  [KO:K07091]
C4K39_1072  [KO:K11720]
C4K39_1322  [KO:K10017] [EC:7.4.2.1]
C4K39_1324  [KO:K10015]
C4K39_1325  [KO:K10016]
C4K39_1326  [KO:K10014]
C4K39_1356  [KO:K01996]
C4K39_1357  [KO:K01995]
C4K39_1358  [KO:K01998]
C4K39_1359  [KO:K01997]
C4K39_1360  [KO:K01999]
C4K39_1421  [KO:K15554]
C4K39_1422  [KO:K15555] [EC:7.6.2.14]
C4K39_1426  [KO:K15553]
C4K39_1431  [KO:K15553]
C4K39_1612  [KO:K18893]
C4K39_1750  [KO:K02193] [EC:7.6.2.5]
C4K39_1751  [KO:K02194]
C4K39_1752  [KO:K02195]
C4K39_1753  [KO:K02196]
C4K39_1766  [KO:K02048]
C4K39_1782  [KO:K02002]
C4K39_2064  [KO:K09808]
C4K39_2065  [KO:K09810] [EC:7.6.2.-]
C4K39_2066  [KO:K09808]
C4K39_2147  [KO:K10439]
C4K39_2148  [KO:K10441] [EC:7.5.2.7]
C4K39_2149  [KO:K10440]
C4K39_2152  [KO:K06726] [EC:5.4.99.62]
C4K39_2187  [KO:K05685] [EC:7.6.2.-]
C4K39_2233  [KO:K11073]
C4K39_2234  [KO:K11074]
C4K39_2235  [KO:K11075]
C4K39_2236  [KO:K11076] [EC:7.6.2.16]
C4K39_2262  [KO:K14698] [EC:7.-.-.-]
C4K39_2263  [KO:K14699] [EC:7.-.-.-]
C4K39_2348  [KO:K11073]
C4K39_2478  [KO:K15553]
C4K39_2609  [KO:K17213]
C4K39_2610  [KO:K17215]
C4K39_2611  [KO:K17214]
C4K39_2665  [KO:K11073]
C4K39_2773  [KO:K13896]
C4K39_2774  [KO:K13895]
C4K39_2775  [KO:K13894]
C4K39_2776  [KO:K13893]
C4K39_2777  [KO:K13893]
C4K39_2944  [KO:K11073]
C4K39_2961  [KO:K12536]
C4K39_2979  [KO:K02073]
C4K39_2980  [KO:K02071]
C4K39_2981  [KO:K02072]
C4K39_3015  [KO:K11073]
C4K39_3260  [KO:K17315]
C4K39_3261  [KO:K17316]
C4K39_3262  [KO:K17317]
C4K39_3263  [KO:K10112] [EC:7.5.2.-]
C4K39_3353  [KO:K10022]
C4K39_3354  [KO:K10024]
C4K39_3355  [KO:K10023]
C4K39_3357  [KO:K10025] [EC:7.4.2.1]
C4K39_3516  [KO:K11073]
C4K39_3541  [KO:K02040]
C4K39_3542  [KO:K02037]
C4K39_3543  [KO:K02038]
C4K39_3544  [KO:K02036] [EC:7.3.2.1]
C4K39_3612  [KO:K12368]
C4K39_3706  [KO:K02012]
C4K39_3707  [KO:K02011]
C4K39_3725  [KO:K15553]
C4K39_3727  [KO:K15554]
C4K39_3728  [KO:K15555] [EC:7.6.2.14]
C4K39_3736  [KO:K11073]
C4K39_3737  [KO:K11073]
C4K39_3738  [KO:K11076] [EC:7.6.2.16]
C4K39_3739  [KO:K11075]
C4K39_3740  [KO:K11074]
C4K39_3749  [KO:K02424]
C4K39_3775  [KO:K02010] [EC:7.2.2.7]
C4K39_3776  [KO:K02011]
C4K39_3777  [KO:K02012]
C4K39_3808  [KO:K09812]
C4K39_3809  [KO:K09811]
C4K39_3902  [KO:K02000] [EC:7.6.2.9]
C4K39_3903  [KO:K02001]
C4K39_3904  [KO:K02002]
C4K39_3914  [KO:K02002]
C4K39_3954  [KO:K01999]
C4K39_4156  [KO:K06858]
C4K39_4274  [KO:K12536]
C4K39_4752  [KO:K10004] [EC:7.4.2.1]
C4K39_4753  [KO:K10002]
C4K39_4754  [KO:K10003]
C4K39_4755  [KO:K10001]
C4K39_4761  [KO:K02010] [EC:7.2.2.7]
C4K39_4958  [KO:K06161]
C4K39_4963  [KO:K05685] [EC:7.6.2.-]
C4K39_5044  [KO:K02012]
C4K39_5045  [KO:K02011]
C4K39_5046  [KO:K02010] [EC:7.2.2.7]
C4K39_5068  [KO:K10017] [EC:7.4.2.1]
C4K39_5069  [KO:K10015]
C4K39_5070  [KO:K10016]
C4K39_5071  [KO:K10014]
C4K39_5245  [KO:K11073]
C4K39_5384  [KO:K02020]
C4K39_5385  [KO:K02018]
C4K39_5386  [KO:K02017] [EC:7.3.2.5]
C4K39_5487  [KO:K14699] [EC:7.-.-.-]
C4K39_5488  [KO:K14698] [EC:7.-.-.-]
C4K39_5507  [KO:K01999]
C4K39_5546  [KO:K13893]
C4K39_5547  [KO:K13894]
C4K39_5548  [KO:K13895]
C4K39_5549  [KO:K13896]
C4K39_5593  [KO:K23188]
C4K39_5594  [KO:K23185]
C4K39_5595  [KO:K23186]
C4K39_5596  [KO:K23187]
C4K39_5635  [KO:K13896]
C4K39_5636  [KO:K13895]
C4K39_5637  [KO:K13894]
C4K39_5638  [KO:K13893]
C4K39_5779  [KO:K10022]
C4K39_5880  [KO:K02040]
C4K39_6014  [KO:K05685] [EC:7.6.2.-]
C4K39_6023  [KO:K06160]
C4K39_6093  [KO:K09815]
C4K39_6094  [KO:K09817] [EC:7.2.2.20]
C4K39_6095  [KO:K09816]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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