KEGG   PATHWAY: qsa00195
Entry
qsa00195                    Pathway                                
Name
Photosynthesis - Quillaja saponaria (soapbark tree)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
qsa00195  Photosynthesis
qsa00195

Organism
Quillaja saponaria (soapbark tree) [GN:qsa]
Gene
O6P43_034683  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_034857  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_034896  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_034921  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035052  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035305  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035337  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035374  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035553  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035576  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035599  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035719  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035856  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_035923  Photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
O6P43_034823  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_034849  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_034975  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035199  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035253  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035256  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035260  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035277  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035406  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035548  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035627  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035723  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035945  Photosystem II CP47 reaction center protein [KO:K02704]
O6P43_035689  Photosystem II CP43 reaction center protein [KO:K02705]
O6P43_035920  Photosystem II CP43 reaction center protein [KO:K02705]
O6P43_036000  Photosystem II CP43 reaction center protein [KO:K02705]
O6P43_034670  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_034931  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035008  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035105  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035265  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035342  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035404  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035416  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035439  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035498  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035520  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035644  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035665  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035854  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
O6P43_035261  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_035625  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_035703  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_035713  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_035840  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_035850  Cytochrome b559 subunit alpha [KO:K02707]
O6P43_034822  photosystem II reaction center protein H [KO:K02709]
O6P43_034848  photosystem II reaction center protein H [KO:K02709]
O6P43_034958  photosystem II reaction center protein H [KO:K02709]
O6P43_034974  photosystem II reaction center protein H [KO:K02709]
O6P43_034976  photosystem II reaction center protein H [KO:K02709]
O6P43_035152  photosystem II reaction center protein H [KO:K02709]
O6P43_035198  photosystem II reaction center protein H [KO:K02709]
O6P43_035252  photosystem II reaction center protein H [KO:K02709]
O6P43_035255  photosystem II reaction center protein H [KO:K02709]
O6P43_035278  photosystem II reaction center protein H [KO:K02709]
O6P43_035407  photosystem II reaction center protein H [KO:K02709]
O6P43_035606  photosystem II reaction center protein H [KO:K02709]
O6P43_035626  photosystem II reaction center protein H [KO:K02709]
O6P43_035724  photosystem II reaction center protein H [KO:K02709]
O6P43_035864  photosystem II reaction center protein H [KO:K02709]
O6P43_024706  Oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
O6P43_033769  Oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
O6P43_009368  PsbP-like protein 1 [KO:K02717]
O6P43_021022  Oxygen-evolving enhancer protein 2-1, chloroplastic [KO:K02717]
O6P43_021038  Oxygen-evolving enhancer protein 2-1, chloroplastic [KO:K02717]
O6P43_005711  PsbP-like protein 1 [KO:K02717]
O6P43_014746  Oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
O6P43_000862  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
O6P43_012491  Oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
O6P43_031727  Oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
O6P43_032993  Oxygen-evolving enhancer 3-2, chloroplastic-like protein [KO:K08901]
O6P43_001168  10 kDa photosystem II polypeptide [KO:K03541]
O6P43_029313  10 kDa photosystem II polypeptide [KO:K03541]
O6P43_015185  Photosystem II 22 kDa protein chloroplastic-like [KO:K03542]
O6P43_010560  Photosystem II reaction center W protein, chloroplastic [KO:K02721]
O6P43_006953  Photosystem II reaction center W protein, chloroplastic [KO:K02721]
O6P43_023929  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
O6P43_030541  Photosystem ii core complex proteins psby, chloroplastic [KO:K02723]
O6P43_000692  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
O6P43_028781  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
O6P43_010448  Photosystem II reaction center Psb28 protein [KO:K08903]
O6P43_006839  Photosystem II reaction center Psb28 protein [KO:K08903]
O6P43_034897  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02689] [EC:1.97.1.12]
O6P43_035163  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_035264  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_035528  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_035600  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_035695  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_035744  Photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
O6P43_034669  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035009  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035104  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035164  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035519  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035529  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035690  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035710  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035762  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_035872  Photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
O6P43_003381  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
O6P43_021579  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
O6P43_010427  Photosystem I reaction center subunit IV chloroplastic-like [KO:K02693]
O6P43_006809  Photosystem I reaction center subunit IV chloroplastic-like [KO:K02693]
O6P43_000980  Photosystem I reaction center subunit III chloroplastic [KO:K02694]
O6P43_021369  Photosystem I reaction center subunit V chloroplastic [KO:K08905]
O6P43_018161  Photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
O6P43_027759  Photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
O6P43_013072  Photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
O6P43_007758  Photosystem I reaction center subunit XI [KO:K02699]
O6P43_030364  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
O6P43_023335  Photosystem I reaction center subunit N, chloroplastic [KO:K02701]
O6P43_028561  photosystem I subunit O [KO:K14332]
O6P43_035192  Cytochrome f [KO:K02634]
O6P43_035251  Cytochrome f [KO:K02634]
O6P43_035262  Cytochrome f [KO:K02634]
O6P43_035682  Cytochrome f [KO:K02634]
O6P43_035704  Cytochrome f [KO:K02634]
O6P43_035733  Cytochrome f [KO:K02634]
O6P43_035841  Cytochrome f [KO:K02634]
O6P43_009719  Cytochrome f [KO:K02634]
O6P43_034648  Cytochrome b6 [KO:K02635]
O6P43_034709  Cytochrome b6 [KO:K02635]
O6P43_034821  Cytochrome b6 [KO:K02635]
O6P43_034847  Cytochrome b6 [KO:K02635]
O6P43_034957  Cytochrome b6 [KO:K02635]
O6P43_034973  Cytochrome b6 [KO:K02635]
O6P43_034977  Cytochrome b6 [KO:K02635]
O6P43_035151  Cytochrome b6 [KO:K02635]
O6P43_035197  Cytochrome b6 [KO:K02635]
O6P43_035254  Cytochrome b6 [KO:K02635]
O6P43_035351  Cytochrome b6 [KO:K02635]
O6P43_035480  Cytochrome b6 [KO:K02635]
O6P43_035541  Cytochrome b6 [KO:K02635]
O6P43_035547  Cytochrome b6 [KO:K02635]
O6P43_035605  Cytochrome b6 [KO:K02635]
O6P43_035643  Cytochrome b6 [KO:K02635]
O6P43_035725  Cytochrome b6 [KO:K02635]
O6P43_035911  Cytochrome b6 [KO:K02635]
O6P43_035960  Cytochrome b6 [KO:K02635]
O6P43_000646  Cytochrome b6-f complex iron-sulfur subunit [KO:K02636] [EC:7.1.1.6]
O6P43_000909  Cytochrome b6-f complex iron-sulfur subunit [KO:K02636] [EC:7.1.1.6]
O6P43_034580  Cytochrome b6-f complex subunit 4 [KO:K02637]
O6P43_016317  Plastocyanin [KO:K02638]
O6P43_018732  Plastocyanin [KO:K02638]
O6P43_024477  Ferredoxin [KO:K02639]
O6P43_008745  Ferredoxin [KO:K02639]
O6P43_028530  Ferredoxin [KO:K02639]
O6P43_012207  Ferredoxin [KO:K02639]
O6P43_003363  Ferredoxin [KO:K02639]
O6P43_004887  Ferredoxin [KO:K02639]
O6P43_031504  Ferredoxin [KO:K02639]
O6P43_023452  Ferredoxin [KO:K02639]
O6P43_024875  Ferredoxin--NADP reductase, chloroplastic [KO:K02641] [EC:1.18.1.2]
O6P43_013124  Ferredoxin--NADP reductase, chloroplastic [KO:K02641] [EC:1.18.1.2]
O6P43_033607  Ferredoxin--NADP reductase, chloroplastic [KO:K02641] [EC:1.18.1.2]
O6P43_029994  Cytochrome c6, chloroplastic [KO:K08906]
O6P43_034900  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_035109  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_035327  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_035522  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_035629  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_035917  ATP synthase subunit beta [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_032331  ATP synthase subunit beta [KO:K02112] [EC:7.1.2.2 7.2.2.1]
O6P43_011920  ATP synthase gamma chain like [KO:K02115]
O6P43_013711  ATP synthase subunit gamma [KO:K02115]
O6P43_031244  ATP synthase subunit gamma [KO:K02115]
O6P43_034807  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035287  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035557  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035883  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035056  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035419  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035534  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035650  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_035694  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
O6P43_017838  ATP synthase delta chain, chloroplastic [KO:K02113]
O6P43_018560  ATP synthase delta chain, chloroplastic [KO:K02113]
O6P43_030724  ATP synthase delta chain, chloroplastic-like [KO:K02113]
O6P43_022547  ATP synthase delta chain, chloroplastic-like [KO:K02113]
O6P43_019452  ATP synthase subunit b', chloroplastic [KO:K02109]
O6P43_015704  ATP synthase subunit b', chloroplastic [KO:K02109]
O6P43_034806  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035055  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035286  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035396  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035418  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035507  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035533  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035556  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035589  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035649  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035693  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035736  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035818  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_035890  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_013808  ATP synthase subunit c, chloroplastic [KO:K02110]
O6P43_034805  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035054  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035171  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035285  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035397  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035417  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035506  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035532  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035555  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035588  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035648  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035692  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035758  ATP synthase subunit a, chloroplastic [KO:K02108]
O6P43_035889  ATP synthase subunit a, chloroplastic [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
qsa00196  Photosynthesis - antenna proteins
qsa00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

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