KEGG   PATHWAY: rbh02010
Entry
rbh02010                    Pathway                                
Name
ABC transporters - Rhodocyclaceae bacterium Thauera-like
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
rbh02010  ABC transporters
rbh02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Rhodocyclaceae bacterium Thauera-like [GN:rbh]
Gene
B4966_01435  tungsten ABC transporter substrate-binding protein [KO:K05772]
B4966_01425  ABC transporter permease [KO:K05773]
B4966_01430  ABC transporter ATP-binding protein [KO:K06857] [EC:7.3.2.6]
B4966_03120  nitrate ABC transporter, permease protein [KO:K15577]
B4966_03125  nitrate ABC transporter ATP-binding protein [KO:K15578] [EC:7.3.2.4]
B4966_14220  molybdate ABC transporter substrate-binding protein [KO:K02020]
B4966_14215  molybdenum ABC transporter permease subunit [KO:K02018]
B4966_14210  molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
B4966_09500  putative 2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K02012]
B4966_05295  Fe(3+) ABC transporter substrate-binding protein [KO:K02012]
B4966_08840  iron ABC transporter permease [KO:K02011]
B4966_09490  phosphonate ABC transporter permease [KO:K02011]
B4966_08845  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
B4966_09495  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
B4966_11715  hypothetical protein [KO:K07323]
B4966_07010  organic solvent ABC transporter substrate-binding protein [KO:K02067]
B4966_11725  outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
B4966_07000  ABC transporter permease [KO:K02066]
B4966_11730  ABC transporter permease [KO:K02066]
B4966_11710  NTP-binding protein [KO:K07122]
B4966_07005  ABC transporter ATP-binding protein [KO:K02065]
B4966_11735  ABC transporter ATP-binding protein [KO:K02065]
B4966_06290  BMP family ABC transporter substrate-binding protein [KO:K07335]
B4966_06300  sugar ABC transporter permease [KO:K23535]
B4966_06295  ABC transporter permease [KO:K23536]
B4966_06305  ABC transporter [KO:K23537]
B4966_04520  phosphate-binding protein [KO:K02040]
B4966_04525  ABC transporter permease [KO:K02037]
B4966_04530  phosphate ABC transporter, permease protein PstA [KO:K02038]
B4966_04535  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
B4966_14675  amino acid ABC transporter substrate-binding protein [KO:K09969]
B4966_14680  amino acid ABC transporter permease [KO:K09970]
B4966_14685  amino acid ABC transporter permease [KO:K09971]
B4966_14690  glnQ; glutamine ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
B4966_00835  amino acid ABC transporter substrate-binding protein [KO:K01999]
B4966_06275  hypothetical protein [KO:K01999]
B4966_02090  ABC transporter permease [KO:K01999]
B4966_01235  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
B4966_11500  hypothetical protein [KO:K01999]
B4966_12155  amino acid ABC transporter substrate-binding protein [KO:K01999]
B4966_02945  branched chain amino acid ABC transporter substrate-binding protein [KO:K01999]
B4966_14670  amino acid ABC transporter substrate-binding protein [KO:K01999]
B4966_02080  branched-chain amino acid ABC transporter permease [KO:K01997]
B4966_00845  branched-chain amino acid ABC transporter permease [KO:K01997]
B4966_01240  branched-chain amino acid ABC transporter permease [KO:K01997]
B4966_02940  branched-chain amino acid ABC transporter permease LivH [KO:K01997]
B4966_14660  amino acid ABC transporter permease [KO:K01997]
B4966_01245  metal-dependent hydrolase [KO:K01995 K01998]
B4966_14665  branched-chain amino acid ABC transporter permease [KO:K01998]
B4966_02085  branched-chain amino acid ABC transporter permease [KO:K01998]
B4966_00840  branched-chain amino acid ABC transporter permease [KO:K01998]
B4966_02935  branched-chain amino acid ABC transporter permease [KO:K01998]
B4966_02075  ABC transporter ATP-binding protein [KO:K01995]
B4966_02930  ABC transporter ATP-binding protein [KO:K01995]
B4966_14650  ABC transporter ATP-binding protein [KO:K01995]
B4966_14800  ABC transporter ATP-binding protein [KO:K01995]
B4966_14655  ABC transporter ATP-binding protein [KO:K01996]
B4966_14805  ABC transporter ATP-binding protein [KO:K01996]
B4966_02095  ABC transporter ATP-binding protein [KO:K01996]
B4966_01250  ABC transporter ATP-binding protein [KO:K01996]
B4966_02925  ABC transporter ATP-binding protein [KO:K01996]
B4966_02910  methionine ABC transporter substrate-binding protein [KO:K02073]
B4966_02915  metal ABC transporter permease [KO:K02072]
B4966_02920  methionine ABC transporter ATP-binding protein [KO:K02071]
B4966_04935  urea ABC transporter substrate-binding protein [KO:K11959]
B4966_04940  urea ABC transporter permease subunit UrtB [KO:K11960]
B4966_04945  urea ABC transporter permease subunit UrtC [KO:K11961]
B4966_04950  urea ABC transporter ATP-binding protein UrtD [KO:K11962]
B4966_08705  urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
B4966_12820  hypothetical protein [KO:K09690]
B4966_12825  hypothetical protein [KO:K09691] [EC:7.5.2.14]
B4966_05520  ABC transporter permease [KO:K09808]
B4966_05525  lipoprotein releasing system, ATP-binding protein [KO:K09810] [EC:7.6.2.-]
B4966_13665  heme exporter protein CcmD [KO:K02196]
B4966_13670  heme ABC transporter permease [KO:K02195]
B4966_13675  heme exporter protein CcmB [KO:K02194]
B4966_13680  heme ABC transporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
B4966_08400  LPS export ABC transporter permease LptF [KO:K07091]
B4966_08395  LPS export ABC transporter permease LptG [KO:K11720]
B4966_14315  LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
B4966_05760  hypothetical protein [KO:K19341]
B4966_05765  copper ABC transporter ATP-binding protein [KO:K19340]
B4966_02855  cell division protein FtsX [KO:K09811]
B4966_02850  cell division ATP-binding protein FtsE [KO:K09812]
B4966_13410  lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
B4966_00545  metal ABC transporter permease [KO:K24821]
B4966_02870  multidrug ABC transporter ATP-binding protein [KO:K18893]
B4966_14150  macrolide ABC transporter permease/ATP-binding protein MacB [KO:K05685] [EC:7.6.2.-]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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