KEGG   PATHWAY: rbk00920
Entry
rbk00920                    Pathway                                
Name
Sulfur metabolism - Rhodopseudomonas boonkerdii
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rbk00920  Sulfur metabolism
rbk00920

Module
rbk_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rbk00920]
rbk_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rbk00920]
Other DBs
GO: 0006790
Organism
Rhodopseudomonas boonkerdii [GN:rbk]
Gene
E0H22_21180  sulfate ABC transporter substrate-binding protein [KO:K02048]
E0H22_21155  sulfate ABC transporter substrate-binding protein [KO:K23163]
E0H22_21150  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
E0H22_21185  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
E0H22_21145  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
E0H22_21190  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
E0H22_21140  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
E0H22_23805  sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_23835  ABC transporter substrate-binding protein [KO:K15553]
E0H22_08920  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_09045  transporter substrate-binding domain-containing protein [KO:K15553]
E0H22_10945  ABC transporter substrate-binding protein [KO:K15553]
E0H22_14155  ABC transporter substrate-binding protein [KO:K15553]
E0H22_14195  ABC transporter substrate-binding protein [KO:K15553]
E0H22_16225  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_16240  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_17040  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_17045  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_21945  ABC transporter substrate-binding protein [KO:K15553]
E0H22_22385  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0H22_23845  ABC transporter permease [KO:K15554]
E0H22_24810  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
E0H22_08930  ABC transporter permease subunit [KO:K15554]
E0H22_09040  ABC transporter permease [KO:K15554]
E0H22_14190  ABC transporter permease subunit [KO:K15554]
E0H22_22390  ABC transporter permease [KO:K15554]
E0H22_23840  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0H22_24805  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
E0H22_08925  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0H22_09035  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0H22_14185  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0H22_22395  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0H22_23810  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_23865  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_24815  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_08940  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_14160  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_16230  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0H22_23905  cysC; adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
E0H22_23910  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
E0H22_07890  cysQ; 3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
E0H22_23915  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
E0H22_14200  sulfite reductase subunit alpha [KO:K00380] [EC:1.8.1.2]
E0H22_21165  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
E0H22_23855  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
E0H22_00885  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
E0H22_08425  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
E0H22_17435  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
E0H22_13680  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
E0H22_23645  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
E0H22_08510  alpha/beta fold hydrolase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
E0H22_12315  alpha/beta fold hydrolase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
E0H22_03290  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
E0H22_21500  fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
E0H22_13885  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
E0H22_19575  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
E0H22_03035  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
E0H22_20670  crotonase/enoyl-CoA hydratase family protein [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rbk00260  Glycine, serine and threonine metabolism
rbk00270  Cysteine and methionine metabolism
rbk00680  Methane metabolism
KO pathway
ko00920   
LinkDB

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