KEGG   PATHWAY: rfq04136
Entry
rfq04136                    Pathway                                
Name
Autophagy - other - Rhinolophus ferrumequinum (greater horseshoe bat)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
rfq04136  Autophagy - other
rfq04136

Other DBs
GO: 0006914
Organism
Rhinolophus ferrumequinum (greater horseshoe bat) [GN:rfq]
Gene
117012918  RPTOR; regulatory-associated protein of mTOR isoform X1 [KO:K07204]
117026614  MTOR; serine/threonine-protein kinase mTOR [KO:K07203] [EC:2.7.11.1]
117019556  MLST8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
117013180  ULK2; serine/threonine-protein kinase ULK2 isoform X1 [KO:K08269] [EC:2.7.11.1]
117030128  ATG13; autophagy-related protein 13 isoform X1 [KO:K08331]
117029312  ATG101; autophagy-related protein 101 [KO:K19730]
117029105  IGBP1; immunoglobulin-binding protein 1 [KO:K17606]
117029762  immunoglobulin-binding protein 1-like [KO:K17606]
117021745  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
117016687  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
117018216  ATG9B; autophagy-related protein 9B isoform X1 [KO:K17907]
117025814  ATG9A; autophagy-related protein 9A isoform X1 [KO:K17907]
117030401  ATG2A; LOW QUALITY PROTEIN: autophagy-related protein 2 homolog A [KO:K17906]
117023947  ATG2B; autophagy-related protein 2 homolog B isoform X1 [KO:K17906]
117013411  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 [KO:K17908]
117016698  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
117018710  BECN2; beclin-2 [KO:K08334]
117013838  BECN1; beclin-1 isoform X1 [KO:K08334]
117011900  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
117037157  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
117024749  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
117020547  ATG5; autophagy protein 5 [KO:K08339]
117025843  ATG16L1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
117037153  ATG7; ubiquitin-like modifier-activating enzyme ATG7 [KO:K08337]
117025170  ATG10; ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
117034634  ATG3; ubiquitin-like-conjugating enzyme ATG3 [KO:K08343]
117012872  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
117034497  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
117029054  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
117026229  ATG4B; cysteine protease ATG4B [KO:K08342] [EC:3.4.22.-]
117027651  ATG4C; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
117022441  ATG4A; cysteine protease ATG4A isoform X1 [KO:K08342] [EC:3.4.22.-]
117037938  ATG4D; cysteine protease ATG4D isoform X1 [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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