KEGG   PATHWAY: senc03030
Entry
senc03030                   Pathway                                
Name
DNA replication - Salmonella enterica subsp. enterica serovar Tennessee
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
senc03030  DNA replication
senc03030

Organism
Salmonella enterica subsp. enterica serovar Tennessee [GN:senc]
Gene
SEET0819_16085  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
SEET0819_08250  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
SEET0819_08085  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
SEET0819_09375  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
SEET0819_12650  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
SEET0819_10200  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
SEET0819_06695  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
SEET0819_06250  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
SEET0819_03030  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
SEET0819_05045  DNA helicase [KO:K02314] [EC:5.6.2.3]
SEET0819_23060  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
SEET0819_05090  single-stranded DNA-binding protein [KO:K03111]
SEET0819_22095  single-stranded DNA-binding protein [KO:K03111]
SEET0819_08245  ribonuclease H [KO:K03469] [EC:3.1.26.4]
SEET0819_08080  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
SEET0819_03830  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
SEET0819_02490  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
SEET0819_19585  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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