PATHWAY: serf01100 Help Entry serf01100                   Pathway                                 Name Metabolic pathways - Serratia sp. FS14 Class BRITE hierarchy Pathway map serf01100   Metabolic pathways Module serf_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:serf01100] serf_M00002   Glycolysis, core module involving three-carbon compounds [PATH:serf01100] serf_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:serf01100] serf_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:serf01100] serf_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:serf01100] serf_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:serf01100] serf_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:serf01100] serf_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:serf01100] serf_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:serf01100] serf_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:serf01100] serf_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:serf01100] serf_M00012   Glyoxylate cycle [PATH:serf01100] serf_M00015   Proline biosynthesis, glutamate => proline [PATH:serf01100] serf_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:serf01100] serf_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:serf01100] serf_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:serf01100] serf_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:serf01100] serf_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:serf01100] serf_M00021   Cysteine biosynthesis, serine => cysteine [PATH:serf01100] serf_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:serf01100] serf_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:serf01100] serf_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:serf01100] serf_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:serf01100] serf_M00026   Histidine biosynthesis, PRPP => histidine [PATH:serf01100] serf_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:serf01100] serf_M00034   Methionine salvage pathway [PATH:serf01100] serf_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:serf01100] serf_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:serf01100] serf_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:serf01100] serf_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:serf01100] serf_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:serf01100] serf_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:serf01100] serf_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:serf01100] serf_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:serf01100] serf_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:serf01100] serf_M00063   CMP-KDO biosynthesis [PATH:serf01100] serf_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:serf01100] serf_M00082   Fatty acid biosynthesis, initiation [PATH:serf01100] serf_M00083   Fatty acid biosynthesis, elongation [PATH:serf01100] serf_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:serf01100] serf_M00087   beta-Oxidation [PATH:serf01100] serf_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:serf01100] serf_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:serf01100] serf_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:serf01100] serf_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:serf01100] serf_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:serf01100] serf_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:serf01100] serf_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:serf01100] serf_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:serf01100] serf_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:serf01100] serf_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:serf01100] serf_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:serf01100] serf_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:serf01100] serf_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:serf01100] serf_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:serf01100] serf_M00136   GABA biosynthesis, prokaryotes, putrescine => GABA [PATH:serf01100] serf_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:serf01100] serf_M00149   Succinate dehydrogenase, prokaryotes [PATH:serf01100] serf_M00150   Fumarate reductase, prokaryotes [PATH:serf01100] serf_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:serf01100] serf_M00168   CAM (Crassulacean acid metabolism), dark [PATH:serf01100] serf_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:serf01100] serf_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:serf01100] serf_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:serf01100] serf_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:serf01100] serf_M00417   Cytochrome o ubiquinol oxidase [PATH:serf01100] serf_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:serf01100] serf_M00533   Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:serf01100] serf_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:serf01100] serf_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:serf01100] serf_M00555   Betaine biosynthesis, choline => betaine [PATH:serf01100] serf_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:serf01100] serf_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:serf01100] serf_M00621   Glycine cleavage system [PATH:serf01100] serf_M00622   Nicotinate degradation, nicotinate => fumarate [PATH:serf01100] serf_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:serf01100] serf_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:serf01100] serf_M00837   Prodigiosin biosynthesis, L-proline => prodigiosin [PATH:serf01100] serf_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:serf01100] serf_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:serf01100] serf_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:serf01100] serf_M00878   Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA [PATH:serf01100] serf_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:serf01100] serf_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:serf01100] serf_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:serf01100] serf_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:serf01100] serf_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:serf01100] serf_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:serf01100] serf_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:serf01100] serf_M00970   Proline degradation, proline => glutamate [PATH:serf01100] Organism Serratia sp. FS14 [GN:serf] Related pathway serf00010   Glycolysis / Gluconeogenesis serf00020   Citrate cycle (TCA cycle) serf00030   Pentose phosphate pathway serf00040   Pentose and glucuronate interconversions serf00051   Fructose and mannose metabolism serf00052   Galactose metabolism serf00053   Ascorbate and aldarate metabolism serf00061   Fatty acid biosynthesis serf00071   Fatty acid degradation serf00130   Ubiquinone and other terpenoid-quinone biosynthesis serf00190   Oxidative phosphorylation serf00220   Arginine biosynthesis serf00230   Purine metabolism serf00240   Pyrimidine metabolism serf00250   Alanine, aspartate and glutamate metabolism serf00260   Glycine, serine and threonine metabolism serf00261   Monobactam biosynthesis serf00270   Cysteine and methionine metabolism serf00280   Valine, leucine and isoleucine degradation serf00290   Valine, leucine and isoleucine biosynthesis serf00300   Lysine biosynthesis serf00310   Lysine degradation serf00330   Arginine and proline metabolism serf00332   Carbapenem biosynthesis serf00333   Prodigiosin biosynthesis serf00340   Histidine metabolism serf00350   Tyrosine metabolism serf00360   Phenylalanine metabolism serf00361   Chlorocyclohexane and chlorobenzene degradation serf00362   Benzoate degradation serf00364   Fluorobenzoate degradation serf00380   Tryptophan metabolism serf00400   Phenylalanine, tyrosine and tryptophan biosynthesis serf00401   Novobiocin biosynthesis serf00410   beta-Alanine metabolism serf00430   Taurine and hypotaurine metabolism serf00440   Phosphonate and phosphinate metabolism serf00450   Selenocompound metabolism serf00460   Cyanoamino acid metabolism serf00470   D-Amino acid metabolism serf00480   Glutathione metabolism serf00500   Starch and sucrose metabolism serf00511   Other glycan degradation serf00520   Amino sugar and nucleotide sugar metabolism serf00521   Streptomycin biosynthesis serf00523   Polyketide sugar unit biosynthesis serf00525   Acarbose and validamycin biosynthesis serf00540   Lipopolysaccharide biosynthesis serf00541   O-Antigen nucleotide sugar biosynthesis serf00542   O-Antigen repeat unit biosynthesis serf00543   Exopolysaccharide biosynthesis serf00550   Peptidoglycan biosynthesis serf00552   Teichoic acid biosynthesis serf00561   Glycerolipid metabolism serf00562   Inositol phosphate metabolism serf00564   Glycerophospholipid metabolism serf00565   Ether lipid metabolism serf00591   Linoleic acid metabolism serf00592   alpha-Linolenic acid metabolism serf00600   Sphingolipid metabolism serf00620   Pyruvate metabolism serf00622   Xylene degradation serf00623   Toluene degradation serf00625   Chloroalkane and chloroalkene degradation serf00626   Naphthalene degradation serf00627   Aminobenzoate degradation serf00630   Glyoxylate and dicarboxylate metabolism serf00633   Nitrotoluene degradation serf00640   Propanoate metabolism serf00643   Styrene degradation serf00650   Butanoate metabolism serf00660   C5-Branched dibasic acid metabolism serf00670   One carbon pool by folate serf00680   Methane metabolism serf00710   Carbon fixation by Calvin cycle serf00720   Other carbon fixation pathways serf00730   Thiamine metabolism serf00740   Riboflavin metabolism serf00750   Vitamin B6 metabolism serf00760   Nicotinate and nicotinamide metabolism serf00770   Pantothenate and CoA biosynthesis serf00780   Biotin metabolism serf00785   Lipoic acid metabolism serf00790   Folate biosynthesis serf00791   Atrazine degradation serf00860   Porphyrin metabolism serf00900   Terpenoid backbone biosynthesis serf00907   Pinene, camphor and geraniol degradation serf00910   Nitrogen metabolism serf00920   Sulfur metabolism serf00930   Caprolactam degradation serf00946   Degradation of flavonoids serf00997   Biosynthesis of various other secondary metabolites serf00999   Biosynthesis of various plant secondary metabolites serf01040   Biosynthesis of unsaturated fatty acids serf01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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