KEGG   PATHWAY: serf00030
Entry
serf00030                   Pathway                                
Name
Pentose phosphate pathway - Serratia sp. FS14
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
serf00030  Pentose phosphate pathway
serf00030

Module
serf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:serf00030]
serf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:serf00030]
serf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:serf00030]
serf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:serf00030]
serf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:serf00030]
serf_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:serf00030]
Other DBs
GO: 0006098
Organism
Serratia sp. FS14 [GN:serf]
Gene
L085_05995  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
L085_14915  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
L085_05040  NAD-dependent epimerase/dehydratase [KO:K19243] [EC:1.1.1.388]
L085_22070  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
L085_06535  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
L085_20525  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
L085_03040  D-ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
L085_11540  transketolase, beta subunit [KO:K00615] [EC:2.2.1.1]
L085_11545  transketolase, alpha subunit [KO:K00615] [EC:2.2.1.1]
L085_10670  transketolase [KO:K00615] [EC:2.2.1.1]
L085_08185  transketolase [KO:K00615] [EC:2.2.1.1]
L085_00860  transaldolase B [KO:K00616] [EC:2.2.1.2]
L085_08320  ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
L085_10685  ribose 5-phosphate isomerase B/allose 6-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
L085_20335  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
L085_01000  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
L085_04360  ribokinase [KO:K00852] [EC:2.7.1.15]
L085_08450  ribokinase [KO:K00852] [EC:2.7.1.15]
L085_00990  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
L085_22415  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
L085_01790  ribose 1,5-bisphosphokinase [KO:K05774] [EC:2.7.4.23]
L085_18720  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
L085_05910  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
L085_14920  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L085_05905  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
L085_13040  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
L085_17945  gluconate 2-dehydrogenase [KO:K06151] [EC:1.1.99.3]
L085_17950  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
L085_04680  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
L085_03270  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
L085_05920  gntK; gluconate kinase 1 [KO:K00851] [EC:2.7.1.12]
L085_03685  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
L085_04690  putative kinase [KO:K00874] [EC:2.7.1.45]
L085_10235  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
L085_08265  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
L085_02055  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
L085_03925  glpX; fructose 1,6-bisphosphatase II [KO:K02446] [EC:3.1.3.11]
L085_03970  6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
serf00010  Glycolysis / Gluconeogenesis
serf00040  Pentose and glucuronate interconversions
serf00052  Galactose metabolism
serf00230  Purine metabolism
serf00240  Pyrimidine metabolism
serf00340  Histidine metabolism
serf00630  Glyoxylate and dicarboxylate metabolism
serf00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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