PATHWAY: sit01100 Help Entry sit01100                    Pathway                                 Name Metabolic pathways - Ruegeria sp. TM1040 Class BRITE hierarchy Pathway map sit01100   Metabolic pathways Module sit_M00002   Glycolysis, core module involving three-carbon compounds [PATH:sit01100] sit_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sit01100] sit_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:sit01100] sit_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sit01100] sit_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sit01100] sit_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:sit01100] sit_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sit01100] sit_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sit01100] sit_M00015   Proline biosynthesis, glutamate => proline [PATH:sit01100] sit_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sit01100] sit_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sit01100] sit_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:sit01100] sit_M00021   Cysteine biosynthesis, serine => cysteine [PATH:sit01100] sit_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sit01100] sit_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:sit01100] sit_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:sit01100] sit_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:sit01100] sit_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:sit01100] sit_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:sit01100] sit_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:sit01100] sit_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sit01100] sit_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sit01100] sit_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sit01100] sit_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sit01100] sit_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sit01100] sit_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sit01100] sit_M00082   Fatty acid biosynthesis, initiation [PATH:sit01100] sit_M00083   Fatty acid biosynthesis, elongation [PATH:sit01100] sit_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:sit01100] sit_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:sit01100] sit_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sit01100] sit_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:sit01100] sit_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sit01100] sit_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:sit01100] sit_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:sit01100] sit_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:sit01100] sit_M00134   Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:sit01100] sit_M00140   C1-unit interconversion, prokaryotes [PATH:sit01100] sit_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:sit01100] sit_M00149   Succinate dehydrogenase, prokaryotes [PATH:sit01100] sit_M00151   Cytochrome bc1 complex respiratory unit [PATH:sit01100] sit_M00155   Cytochrome c oxidase, prokaryotes [PATH:sit01100] sit_M00156   Cytochrome c oxidase, cbb3-type [PATH:sit01100] sit_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:sit01100] sit_M00169   CAM (Crassulacean acid metabolism), light [PATH:sit01100] sit_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sit01100] sit_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:sit01100] sit_M00373   Ethylmalonyl pathway [PATH:sit01100] sit_M00417   Cytochrome o ubiquinol oxidase [PATH:sit01100] sit_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sit01100] sit_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sit01100] sit_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sit01100] sit_M00555   Betaine biosynthesis, choline => betaine [PATH:sit01100] sit_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sit01100] sit_M00621   Glycine cleavage system [PATH:sit01100] sit_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sit01100] sit_M00793   dTDP-L-rhamnose biosynthesis [PATH:sit01100] sit_M00844   Arginine biosynthesis, ornithine => arginine [PATH:sit01100] sit_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sit01100] sit_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sit01100] sit_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sit01100] sit_M00919   Ectoine degradation, ectoine => aspartate [PATH:sit01100] sit_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:sit01100] sit_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sit01100] sit_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:sit01100] sit_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:sit01100] sit_M00970   Proline degradation, proline => glutamate [PATH:sit01100] Organism Ruegeria sp. TM1040 [GN:sit] Related pathway sit00010   Glycolysis / Gluconeogenesis sit00020   Citrate cycle (TCA cycle) sit00030   Pentose phosphate pathway sit00040   Pentose and glucuronate interconversions sit00051   Fructose and mannose metabolism sit00052   Galactose metabolism sit00053   Ascorbate and aldarate metabolism sit00061   Fatty acid biosynthesis sit00071   Fatty acid degradation sit00074   Mycolic acid biosynthesis sit00121   Secondary bile acid biosynthesis sit00130   Ubiquinone and other terpenoid-quinone biosynthesis sit00190   Oxidative phosphorylation sit00220   Arginine biosynthesis sit00230   Purine metabolism sit00240   Pyrimidine metabolism sit00250   Alanine, aspartate and glutamate metabolism sit00260   Glycine, serine and threonine metabolism sit00261   Monobactam biosynthesis sit00270   Cysteine and methionine metabolism sit00280   Valine, leucine and isoleucine degradation sit00290   Valine, leucine and isoleucine biosynthesis sit00300   Lysine biosynthesis sit00310   Lysine degradation sit00330   Arginine and proline metabolism sit00332   Carbapenem biosynthesis sit00340   Histidine metabolism sit00350   Tyrosine metabolism sit00360   Phenylalanine metabolism sit00361   Chlorocyclohexane and chlorobenzene degradation sit00362   Benzoate degradation sit00380   Tryptophan metabolism sit00400   Phenylalanine, tyrosine and tryptophan biosynthesis sit00401   Novobiocin biosynthesis sit00405   Phenazine biosynthesis sit00410   beta-Alanine metabolism sit00430   Taurine and hypotaurine metabolism sit00440   Phosphonate and phosphinate metabolism sit00450   Selenocompound metabolism sit00460   Cyanoamino acid metabolism sit00470   D-Amino acid metabolism sit00480   Glutathione metabolism sit00500   Starch and sucrose metabolism sit00511   Other glycan degradation sit00520   Amino sugar and nucleotide sugar metabolism sit00521   Streptomycin biosynthesis sit00523   Polyketide sugar unit biosynthesis sit00525   Acarbose and validamycin biosynthesis sit00540   Lipopolysaccharide biosynthesis sit00541   O-Antigen nucleotide sugar biosynthesis sit00543   Exopolysaccharide biosynthesis sit00550   Peptidoglycan biosynthesis sit00552   Teichoic acid biosynthesis sit00561   Glycerolipid metabolism sit00562   Inositol phosphate metabolism sit00564   Glycerophospholipid metabolism sit00600   Sphingolipid metabolism sit00620   Pyruvate metabolism sit00621   Dioxin degradation sit00622   Xylene degradation sit00625   Chloroalkane and chloroalkene degradation sit00626   Naphthalene degradation sit00627   Aminobenzoate degradation sit00630   Glyoxylate and dicarboxylate metabolism sit00633   Nitrotoluene degradation sit00640   Propanoate metabolism sit00643   Styrene degradation sit00650   Butanoate metabolism sit00660   C5-Branched dibasic acid metabolism sit00670   One carbon pool by folate sit00680   Methane metabolism sit00710   Carbon fixation by Calvin cycle sit00720   Other carbon fixation pathways sit00730   Thiamine metabolism sit00740   Riboflavin metabolism sit00750   Vitamin B6 metabolism sit00760   Nicotinate and nicotinamide metabolism sit00770   Pantothenate and CoA biosynthesis sit00780   Biotin metabolism sit00785   Lipoic acid metabolism sit00790   Folate biosynthesis sit00860   Porphyrin metabolism sit00900   Terpenoid backbone biosynthesis sit00903   Limonene degradation sit00906   Carotenoid biosynthesis sit00907   Pinene, camphor and geraniol degradation sit00910   Nitrogen metabolism sit00920   Sulfur metabolism sit00930   Caprolactam degradation sit00946   Degradation of flavonoids sit00999   Biosynthesis of various plant secondary metabolites sit01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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