KEGG   PATHWAY: snm02010
Entry
snm02010                    Pathway                                
Name
ABC transporters - Streptococcus pneumoniae 70585 (serotype 5)
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
snm02010  ABC transporters
snm02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Streptococcus pneumoniae 70585 (serotype 5) [GN:snm]
Gene
SP70585_1886  ABC transporter, substrate-binding protein [KO:K02012]
SP70585_1884  binding-protein-dependent transport systems inner membrane component [KO:K02011]
SP70585_1885  spermidine/putrescine import ATP-binding protein PotA [KO:K02010] [EC:7.2.2.7]
SP70585_1424  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein [KO:K11069]
SP70585_1425  spermidine/putrescine ABC transporter, permease protein [KO:K11070]
SP70585_1426  ABC transporter membrane-spanning permease - spermidine/putrescine transport [KO:K11071]
SP70585_1427  spermidine/putrescine import ATP-binding protein PotA [KO:K11072] [EC:7.6.2.11]
SP70585_1916  choline transporter [KO:K05845 K05846]
SP70585_1917  choline transport ATP-binding protein opuBA [KO:K05847] [EC:7.6.2.9]
SP70585_1620  multiple sugar-binding transport ATP-binding protein MsmK [KO:K10112] [EC:7.5.2.-]
SP70585_2213  maltose/maltodextrin-binding protein [KO:K15770]
SP70585_2214  maltodextrin transport system permease protein MalC [KO:K15771]
SP70585_2215  ABC transporter membrane-spanning permease - maltose/maltodextrin [KO:K15772]
SP70585_1955  sugar ABC transporter, sugar-binding protein [KO:K10117]
SP70585_1954  sugar ABC transporter, permease protein [KO:K10118]
SP70585_1953  sugar ABC transporter, permease protein [KO:K10119]
SP70585_0153  ABC transporter, substrate-binding protein [KO:K17318]
SP70585_0151  ABC transporter, permease protein [KO:K17319]
SP70585_0152  protein LplC [KO:K17320]
SP70585_0881  lipoprotein [KO:K07335]
SP70585_0883  ABC transporter membrane-spanning permease - ribose/galactose transport [KO:K23535]
SP70585_0884  ABC transporter membrane-spanning permease - ribose/galactose transport [KO:K23536]
SP70585_0882  ribose import ATP-binding protein RbsA [KO:K23537]
SP70585_1439  phosphate-binding protein PstS 1 (PBP 1) [KO:K02040]
SP70585_2190  ABC transporter substrate-binding protein - phosphate transport [KO:K02040]
SP70585_1438  pstC1; phosphate ABC transporter, permease protein PstC [KO:K02037]
SP70585_2191  pstC2; phosphate ABC transporter, permease protein PstC [KO:K02037]
SP70585_1437  pstA1; phosphate ABC transporter, permease protein PstA [KO:K02038]
SP70585_2192  pstA2; phosphate ABC transporter, permease protein PstA [KO:K02038]
SP70585_1435  pstB1; phosphate ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
SP70585_1436  pstB2; phosphate ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
SP70585_2193  pstB3; phosphate ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
SP70585_1303  amino acid ABC transporter, amino acid-binding protein/permease protein [KO:K10036 K10037]
SP70585_1304  glutamine transport ATP-binding protein GlnQ [KO:K10038] [EC:7.4.2.1]
SP70585_0671  amino acid ABC transporter, amino acid-binding protein [KO:K10039]
SP70585_0670  ABC transporter membrane-spanning permease - glutamine transport [KO:K10040]
SP70585_0669  ABC transporter membrane-spanning permease - glutamine transport [KO:K10040]
SP70585_0672  glutamine transport ATP-binding protein GlnQ [KO:K10041] [EC:7.4.2.1]
SP70585_0222  ABC transporter substrate-binding protein - amino acid transport [KO:K02424]
SP70585_1502  ABC transporter membrane-spanning permease - aspartate/glutamate transport [KO:K10009]
SP70585_1501  L-cystine import ATP-binding protein TcyN [KO:K10010] [EC:7.4.2.1]
SP70585_1433  amino acid ABC transporter, amino acid-binding protein [KO:K23059]
SP70585_0860  amino acid ABC transporter, permease protein [KO:K17077]
SP70585_0861  glutamine transport ATP-binding protein GlnQ [KO:K23060] [EC:7.4.2.1]
SP70585_0523  amino acid ABC transporter, amino acid-binding protein/permease protein [KO:K17073 K17074]
SP70585_0522  L-cystine import ATP-binding protein TcyN [KO:K17076]
SP70585_0794  ABC transporter substrate-binding protein - branched chain amino acid transport [KO:K01999]
SP70585_0795  high-affinity branched-chain amino acid transport system permeaseprotein LivH (LIV-I protein H) [KO:K01997]
SP70585_0796  ABC transporter membrane-spanning permease - branched chain amino acid transport [KO:K01998]
SP70585_0797  high-affinity branched-chain amino acid transport ATP-binding proteinlivG (LIV-I protein G) [KO:K01995]
SP70585_0798  high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) [KO:K01996]
SP70585_0223  lipoprotein [KO:K02073]
SP70585_0226  ABC transporter permease protein [KO:K02072]
SP70585_0225  methionine import ATP-binding protein MetN [KO:K02071]
SP70585_0438  oligopeptide binding protein [KO:K15580]
SP70585_1567  oligopeptide binding lipoprotein [KO:K15580]
SP70585_1949  AmiA protein [KO:K15580]
SP70585_1948  oligopeptide transport system permease protein AmiC [KO:K15581]
SP70585_1947  oligopeptide transport system permease protein AmiD [KO:K15582]
SP70585_1946  oligopeptide transport ATP-binding protein OppD [KO:K15583]
SP70585_1945  oligopeptide transport ATP-binding protein AmiF [KO:K10823]
SP70585_1112  ABC transporter substrate-binding protein - iron transport [KO:K25286]
SP70585_1113  iron-compound ABC transporter, permease protein [KO:K23186]
SP70585_1114  ABC transporter membrane-spanning permease - iron transport [KO:K23187]
SP70585_1115  ferric enterobactin transport ATP-binding protein FepC [KO:K23188] [EC:7.2.2.17 7.2.2.-]
SP70585_1042  zinc-binding lipoprotein AdcA [KO:K09815]
SP70585_2295  zinc-binding lipoprotein AdcA [KO:K09815]
SP70585_2296  ABC transporter membrane-spanning permease - Zinc [KO:K09816]
SP70585_2297  zinc transport system ATP-binding protein AdcC [KO:K09817] [EC:7.2.2.20]
SP70585_1691  manganese ABC transporter substrate-binding lipoprotein (Adhesin B) (Saliva-binding protein) [KO:K19971]
SP70585_1690  manganese transport system membrane protein MntB [KO:K19972]
SP70585_1689  manganese transport system ATP-binding protein MntA [KO:K10830] [EC:7.2.2.5]
SP70585_0826  biotin synthase [KO:K03523]
SP70585_0548  cobalt transport family protein [KO:K16785]
SP70585_2346  ABC transporter permease protein [KO:K16785]
SP70585_0768  conserved hypothetical protein [KO:K16785]
SP70585_1478  cobalt transport protein [KO:K16785]
SP70585_2348  cobalt import ATP-binding protein CbiO 2 [KO:K16786] [EC:7.-.-.-]
SP70585_2347  cobalt import ATP-binding protein CbiO 1 [KO:K16787] [EC:7.-.-.-]
SP70585_0950  ABC-type antimicrobial peptide transport system, permease component [KO:K19084]
SP70585_0949  bacitracin export ATP-binding protein BceA [KO:K19083]
SP70585_0802  cell division ABC transporter, permease protein FtsX [KO:K09811]
SP70585_0801  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
SP70585_1475  ABC transporter, ATP-binding/permease protein [KO:K14698] [EC:7.-.-.-]
SP70585_1476  ABC transporter, ATP-binding protein [KO:K14699] [EC:7.-.-.-]
SP70585_1894  ABC transporter, ATP-binding protein [KO:K18889]
SP70585_1893  ABC transporter, ATP-binding protein [KO:K18890]
SP70585_2182  ABC transporter, ATP-binding/permease protein [KO:K18891]
SP70585_2180  ABC transporter, ATP-binding/permease protein [KO:K18892]
SP70585_1397  ABC transporter, ATP-binding/permease protein [KO:K18887]
SP70585_1396  ABC transporter, ATP-binding/permease protein [KO:K18888]
SP70585_0109  transport/processing ATP-binding protein ComA [KO:K12292] [EC:3.4.22.-]
SP70585_0180  transport/processing ATP-binding protein ComA [KO:K20344]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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