KEGG   PATHWAY: sphy01100
Entry
sphy01100                   Pathway                                
Name
Metabolic pathways - Sphingorhabdus sp. YGSMI21
Class
Pathway map
sphy01100  Metabolic pathways
sphy01100

Module
sphy_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sphy01100]
sphy_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sphy01100]
sphy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sphy01100]
sphy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sphy01100]
sphy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sphy01100]
sphy_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sphy01100]
sphy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sphy01100]
sphy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sphy01100]
sphy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sphy01100]
sphy_M00012  Glyoxylate cycle [PATH:sphy01100]
sphy_M00015  Proline biosynthesis, glutamate => proline [PATH:sphy01100]
sphy_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:sphy01100]
sphy_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:sphy01100]
sphy_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:sphy01100]
sphy_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:sphy01100]
sphy_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sphy01100]
sphy_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:sphy01100]
sphy_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:sphy01100]
sphy_M00026  Histidine biosynthesis, PRPP => histidine [PATH:sphy01100]
sphy_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:sphy01100]
sphy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sphy01100]
sphy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sphy01100]
sphy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sphy01100]
sphy_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sphy01100]
sphy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sphy01100]
sphy_M00082  Fatty acid biosynthesis, initiation [PATH:sphy01100]
sphy_M00083  Fatty acid biosynthesis, elongation [PATH:sphy01100]
sphy_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:sphy01100]
sphy_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:sphy01100]
sphy_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:sphy01100]
sphy_M00098  Acylglycerol degradation [PATH:sphy01100]
sphy_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sphy01100]
sphy_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:sphy01100]
sphy_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:sphy01100]
sphy_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sphy01100]
sphy_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:sphy01100]
sphy_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:sphy01100]
sphy_M00149  Succinate dehydrogenase, prokaryotes [PATH:sphy01100]
sphy_M00151  Cytochrome bc1 complex respiratory unit [PATH:sphy01100]
sphy_M00155  Cytochrome c oxidase, prokaryotes [PATH:sphy01100]
sphy_M00156  Cytochrome c oxidase, cbb3-type [PATH:sphy01100]
sphy_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sphy01100]
sphy_M00168  CAM (Crassulacean acid metabolism), dark [PATH:sphy01100]
sphy_M00169  CAM (Crassulacean acid metabolism), light [PATH:sphy01100]
sphy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sphy01100]
sphy_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:sphy01100]
sphy_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:sphy01100]
sphy_M00569  Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:sphy01100]
sphy_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:sphy01100]
sphy_M00621  Glycine cleavage system [PATH:sphy01100]
sphy_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sphy01100]
sphy_M00844  Arginine biosynthesis, ornithine => arginine [PATH:sphy01100]
sphy_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sphy01100]
sphy_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sphy01100]
sphy_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sphy01100]
sphy_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sphy01100]
sphy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:sphy01100]
sphy_M00970  Proline degradation, proline => glutamate [PATH:sphy01100]
Organism
Sphingorhabdus sp. YGSMI21 [GN:sphy]
Related
pathway
sphy00010  Glycolysis / Gluconeogenesis
sphy00020  Citrate cycle (TCA cycle)
sphy00030  Pentose phosphate pathway
sphy00040  Pentose and glucuronate interconversions
sphy00051  Fructose and mannose metabolism
sphy00052  Galactose metabolism
sphy00053  Ascorbate and aldarate metabolism
sphy00061  Fatty acid biosynthesis
sphy00071  Fatty acid degradation
sphy00121  Secondary bile acid biosynthesis
sphy00130  Ubiquinone and other terpenoid-quinone biosynthesis
sphy00190  Oxidative phosphorylation
sphy00220  Arginine biosynthesis
sphy00230  Purine metabolism
sphy00240  Pyrimidine metabolism
sphy00250  Alanine, aspartate and glutamate metabolism
sphy00260  Glycine, serine and threonine metabolism
sphy00261  Monobactam biosynthesis
sphy00270  Cysteine and methionine metabolism
sphy00280  Valine, leucine and isoleucine degradation
sphy00290  Valine, leucine and isoleucine biosynthesis
sphy00300  Lysine biosynthesis
sphy00310  Lysine degradation
sphy00330  Arginine and proline metabolism
sphy00332  Carbapenem biosynthesis
sphy00340  Histidine metabolism
sphy00350  Tyrosine metabolism
sphy00360  Phenylalanine metabolism
sphy00361  Chlorocyclohexane and chlorobenzene degradation
sphy00362  Benzoate degradation
sphy00364  Fluorobenzoate degradation
sphy00380  Tryptophan metabolism
sphy00400  Phenylalanine, tyrosine and tryptophan biosynthesis
sphy00401  Novobiocin biosynthesis
sphy00410  beta-Alanine metabolism
sphy00430  Taurine and hypotaurine metabolism
sphy00450  Selenocompound metabolism
sphy00460  Cyanoamino acid metabolism
sphy00470  D-Amino acid metabolism
sphy00480  Glutathione metabolism
sphy00500  Starch and sucrose metabolism
sphy00520  Amino sugar and nucleotide sugar metabolism
sphy00521  Streptomycin biosynthesis
sphy00541  O-Antigen nucleotide sugar biosynthesis
sphy00542  O-Antigen repeat unit biosynthesis
sphy00543  Exopolysaccharide biosynthesis
sphy00550  Peptidoglycan biosynthesis
sphy00552  Teichoic acid biosynthesis
sphy00561  Glycerolipid metabolism
sphy00562  Inositol phosphate metabolism
sphy00564  Glycerophospholipid metabolism
sphy00565  Ether lipid metabolism
sphy00590  Arachidonic acid metabolism
sphy00620  Pyruvate metabolism
sphy00621  Dioxin degradation
sphy00622  Xylene degradation
sphy00623  Toluene degradation
sphy00624  Polycyclic aromatic hydrocarbon degradation
sphy00625  Chloroalkane and chloroalkene degradation
sphy00626  Naphthalene degradation
sphy00627  Aminobenzoate degradation
sphy00630  Glyoxylate and dicarboxylate metabolism
sphy00633  Nitrotoluene degradation
sphy00640  Propanoate metabolism
sphy00642  Ethylbenzene degradation
sphy00643  Styrene degradation
sphy00650  Butanoate metabolism
sphy00660  C5-Branched dibasic acid metabolism
sphy00670  One carbon pool by folate
sphy00680  Methane metabolism
sphy00730  Thiamine metabolism
sphy00740  Riboflavin metabolism
sphy00750  Vitamin B6 metabolism
sphy00760  Nicotinate and nicotinamide metabolism
sphy00770  Pantothenate and CoA biosynthesis
sphy00780  Biotin metabolism
sphy00785  Lipoic acid metabolism
sphy00790  Folate biosynthesis
sphy00791  Atrazine degradation
sphy00860  Porphyrin metabolism
sphy00900  Terpenoid backbone biosynthesis
sphy00903  Limonene degradation
sphy00906  Carotenoid biosynthesis
sphy00907  Pinene, camphor and geraniol degradation
sphy00910  Nitrogen metabolism
sphy00920  Sulfur metabolism
sphy00930  Caprolactam degradation
sphy00946  Degradation of flavonoids
sphy00984  Steroid degradation
sphy00996  Biosynthesis of various alkaloids
sphy00999  Biosynthesis of various plant secondary metabolites
sphy01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
LinkDB

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