KEGG   PATHWAY: sphy00230
Entry
sphy00230                   Pathway                                
Name
Purine metabolism - Sphingorhabdus sp. YGSMI21
Class
Metabolism; Nucleotide metabolism
Pathway map
sphy00230  Purine metabolism
sphy00230

Module
sphy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sphy00230]
sphy_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:sphy00230]
sphy_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:sphy00230]
sphy_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:sphy00230]
sphy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sphy00230]
sphy_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:sphy00230]
Other DBs
GO: 0006163 0042278
Organism
Sphingorhabdus sp. YGSMI21 [GN:sphy]
Gene
CHN51_18195  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
CHN51_05720  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
CHN51_17540  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
CHN51_11290  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
CHN51_18050  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
CHN51_11905  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
CHN51_03160  phosphoribosylformylglycinamidine synthase II [KO:K23269] [EC:6.3.5.3]
CHN51_08840  phosphoribosylformylglycinamidine synthase [KO:K23264] [EC:6.3.5.3]
CHN51_08835  phosphoribosylformylglycinamidine synthase I [KO:K23265] [EC:6.3.5.3 3.5.1.2]
CHN51_18045  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
CHN51_01760  5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
CHN51_01755  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
CHN51_08850  phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
CHN51_17360  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
CHN51_01800  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
CHN51_03735  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
CHN51_09640  5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
CHN51_02105  polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
CHN51_17620  IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
CHN51_18095  nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
CHN51_12330  rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
CHN51_13785  xanthine dehydrogenase [KO:K11177] [EC:1.17.1.4]
CHN51_13790  xanthine dehydrogenase [KO:K11178] [EC:1.17.1.4]
CHN51_13795  (2Fe-2S)-binding protein [KO:K13483]
CHN51_03290  GMP synthase (glutamine-hydrolyzing) [KO:K01951] [EC:6.3.5.2]
CHN51_09950  guanylate kinase [KO:K00942] [EC:2.7.4.8]
CHN51_11490  ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
CHN51_11500  ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
CHN51_12025  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
CHN51_03540  bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
CHN51_18025  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
CHN51_13705  exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
CHN51_01395  hypothetical protein [KO:K01768] [EC:4.6.1.1]
CHN51_11615  adenylate/guanylate cyclase domain-containing protein [KO:K01768] [EC:4.6.1.1]
CHN51_12120  hypothetical protein [KO:K01768] [EC:4.6.1.1]
CHN51_04085  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
CHN51_02780  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
CHN51_01085  adenylate kinase [KO:K00939] [EC:2.7.4.3]
CHN51_14990  nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
CHN51_02750  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
CHN51_12655  adenylyl-sulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
CHN51_12650  sulfate adenylyltransferase small subunit [KO:K00957] [EC:2.7.7.4]
CHN51_07410  ureidoglycolate hydrolase [KO:K01483] [EC:4.3.2.3]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
sphy00030  Pentose phosphate pathway
sphy00220  Arginine biosynthesis
sphy00250  Alanine, aspartate and glutamate metabolism
sphy00260  Glycine, serine and threonine metabolism
sphy00340  Histidine metabolism
sphy00630  Glyoxylate and dicarboxylate metabolism
sphy00730  Thiamine metabolism
sphy00740  Riboflavin metabolism
sphy00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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