KEGG   PATHWAY: sspl00195
Entry
sspl00195                   Pathway                                
Name
Photosynthesis - Salvia splendens (scarlet sage)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
sspl00195  Photosynthesis
sspl00195

Module
sspl_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:sspl00195]
sspl_M00161  Photosystem II [PATH:sspl00195]
sspl_M00163  Photosystem I [PATH:sspl00195]
Organism
Salvia splendens (scarlet sage) [GN:sspl]
Gene
59436127  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
121788926  photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
121766993  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
59436032  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
121788930  photosystem II CP47 reaction center protein [KO:K02704]
121789903  photosystem II CP47 reaction center protein [KO:K02704]
59436050  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
121788942  LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [KO:K02705]
59436136  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
59436104  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
59436105  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
59436100  psbH; photosystem II phosphoprotein [KO:K02709]
59436097  psbI; photosystem II protein I [KO:K02710]
59436056  psbJ; photosystem II protein J [KO:K02711]
59436137  psbK; photosystem II protein K [KO:K02712]
59436101  psbL; photosystem II protein L [KO:K02713]
59436116  psbM; photosystem II protein M [KO:K02714]
121747185  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
121805963  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
121752960  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
121808563  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
121785216  oxygen-evolving enhancer protein 2-1, chloroplastic-like [KO:K02717]
121786099  psbP-like protein 1, chloroplastic [KO:K02717]
121787212  oxygen-evolving enhancer protein 2-1, chloroplastic-like [KO:K02717]
121762030  psbP-like protein 1, chloroplastic isoform X1 [KO:K02717]
121766109  psbP-like protein 1, chloroplastic [KO:K02717]
121741220  oxygen-evolving enhancer protein 2, chloroplastic-like isoform X1 [KO:K02717]
121811406  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
121745596  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
121759703  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
121773810  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
121775988  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
121790396  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
121768141  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
121742724  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
121755481  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
121756105  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121744944  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121741996  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
121758603  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
121805870  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
121806235  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
121754921  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
59436035  psbT; photosystem II protein T [KO:K02718]
121792933  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
121755471  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
121770550  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
121757056  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
121767276  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
121753713  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
59436115  psbZ; photosystem II protein Z [KO:K02724]
121811581  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
121757186  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
121743269  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
121800744  photosystem II reaction center Psb28 protein [KO:K08903]
59436027  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
121788935  photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
121754310  photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
59436082  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
121788936  photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
59436033  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
121759476  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
121808621  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
121760193  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
121763393  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
121792699  photosystem I reaction center subunit IV A, chloroplastic-like [KO:K02693]
121752875  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
121771278  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
121768368  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
121756845  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
121753829  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
121753971  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
121771587  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
121795151  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
121768516  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
121797832  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
59436042  psaI; photosystem I subunit VIII [KO:K02696]
59436123  psaJ; photosystem I subunit IX [KO:K02697]
121757104  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
121753822  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
121787240  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
121787241  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
121748269  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
121748270  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
121761774  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
121771647  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
121768210  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
121755903  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
121811444  photosystem I subunit O-like [KO:K14332]
121743486  photosystem I subunit O-like [KO:K14332]
59436062  petA; cytochrome f [KO:K02634]
121788937  cytochrome f-like [KO:K02634]
121809566  cytochrome f [KO:K02634]
59436093  petB; cytochrome b6 [KO:K02635]
121788909  cytochrome b6-like [KO:K02635]
121789923  cytochrome b6 [KO:K02635]
121756416  cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
121759644  cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
121742482  cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
59436044  petD; cytochrome b6/f complex subunit IV [KO:K02637]
121788933  cytochrome b6-f complex subunit 4 [KO:K02637]
59436114  petG; cytochrome b6/f complex subunit V [KO:K02640]
59436143  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
121799559  plastocyanin-like [KO:K02638]
121802585  plastocyanin-like [KO:K02638]
121793110  plastocyanin-like [KO:K02638]
121807359  plastocyanin-like [KO:K02638]
121743996  ferredoxin-like [KO:K02639]
121811554  ferredoxin, root R-B1-like [KO:K02639]
121745244  ferredoxin, root R-B1-like [KO:K02639]
121786353  ferredoxin, root R-B1-like [KO:K02639]
121746205  ferredoxin, root R-B1-like [KO:K02639]
121800309  ferredoxin C 2, chloroplastic-like [KO:K02639]
121801634  ferredoxin-A-like [KO:K02639]
121775207  ferredoxin C 1, chloroplastic [KO:K02639]
121761330  ferredoxin, root R-B1-like [KO:K02639]
121749399  ferredoxin-A-like [KO:K02639]
121791948  ferredoxin, root R-B1-like [KO:K02639]
121792354  ferredoxin-A-like [KO:K02639]
121793755  ferredoxin-A-like [KO:K02639]
121795328  ferredoxin-A-like [KO:K02639]
121742232  ferredoxin, root R-B1-like [KO:K02639]
121796156  ferredoxin C 2, chloroplastic-like [KO:K02639]
121796261  ferredoxin-3, chloroplastic-like [KO:K02639]
121786414  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121774825  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
121774826  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121788731  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121777148  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like isoform X1 [KO:K02641] [EC:1.18.1.2]
121777149  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121805356  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121808171  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
121771434  cytochrome c6, chloroplastic-like [KO:K08906]
121768384  cytochrome c6, chloroplastic-like isoform X1 [KO:K08906]
59436133  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
121805332  ATP synthase epsilon chain, chloroplastic [KO:K02114]
59436077  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
121788944  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
121773684  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
121773899  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
121777420  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
121777468  ATP synthase gamma chain, chloroplastic [KO:K02115]
121805946  ATP synthase gamma chain 2, chloroplastic-like [KO:K02115]
121807260  ATP synthase gamma chain 2, chloroplastic-like [KO:K02115]
59436138  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
121788934  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
121757735  ATP synthase delta chain, chloroplastic-like [KO:K02113]
121799100  uncharacterized protein LOC121799100 [KO:K02113]
121800632  ATP synthase delta chain, chloroplastic-like [KO:K02113]
121803088  ATP synthase delta chain, chloroplastic-like [KO:K02113]
121804247  ATP synthase delta chain, chloroplastic-like [KO:K02113]
121792872  ATP synthase delta chain, chloroplastic [KO:K02113]
121806222  ATP synthase delta chain, chloroplastic-like [KO:K02113]
59436036  atpF; ATP synthase CF0 subunit I [KO:K02109]
121789521  LOW QUALITY PROTEIN: putative ATP synthase protein YMF19 [KO:K02109]
121804467  ATP synthase subunit b', chloroplastic-like [KO:K02109]
121809669  ATP synthase subunit b', chloroplastic-like [KO:K02109]
59436046  atpH; ATP synthase CF0 subunit III [KO:K02110]
121788911  ATP synthase subunit c, chloroplastic [KO:K02110]
59436092  atpI; ATP synthase CF0 subunit IV [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
sspl00196  Photosynthesis - antenna proteins
sspl00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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