PATHWAY: syb01100 Help Entry syb01100                    Pathway                                 Name Metabolic pathways - Sphingobium sp. YBL2 Class BRITE hierarchy Pathway map syb01100   Metabolic pathways Module syb_M00002   Glycolysis, core module involving three-carbon compounds [PATH:syb01100] syb_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:syb01100] syb_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:syb01100] syb_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:syb01100] syb_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:syb01100] syb_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:syb01100] syb_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:syb01100] syb_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:syb01100] syb_M00012   Glyoxylate cycle [PATH:syb01100] syb_M00015   Proline biosynthesis, glutamate => proline [PATH:syb01100] syb_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:syb01100] syb_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:syb01100] syb_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:syb01100] syb_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:syb01100] syb_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:syb01100] syb_M00021   Cysteine biosynthesis, serine => cysteine [PATH:syb01100] syb_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:syb01100] syb_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:syb01100] syb_M00026   Histidine biosynthesis, PRPP => histidine [PATH:syb01100] syb_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:syb01100] syb_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:syb01100] syb_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:syb01100] syb_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:syb01100] syb_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:syb01100] syb_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:syb01100] syb_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:syb01100] syb_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:syb01100] syb_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:syb01100] syb_M00082   Fatty acid biosynthesis, initiation [PATH:syb01100] syb_M00083   Fatty acid biosynthesis, elongation [PATH:syb01100] syb_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:syb01100] syb_M00091   Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:syb01100] syb_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:syb01100] syb_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:syb01100] syb_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:syb01100] syb_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:syb01100] syb_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:syb01100] syb_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:syb01100] syb_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:syb01100] syb_M00149   Succinate dehydrogenase, prokaryotes [PATH:syb01100] syb_M00151   Cytochrome bc1 complex respiratory unit [PATH:syb01100] syb_M00155   Cytochrome c oxidase, prokaryotes [PATH:syb01100] syb_M00156   Cytochrome c oxidase, cbb3-type [PATH:syb01100] syb_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:syb01100] syb_M00168   CAM (Crassulacean acid metabolism), dark [PATH:syb01100] syb_M00169   CAM (Crassulacean acid metabolism), light [PATH:syb01100] syb_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:syb01100] syb_M00417   Cytochrome o ubiquinol oxidase [PATH:syb01100] syb_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:syb01100] syb_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:syb01100] syb_M00548   Benzene degradation, benzene => catechol [PATH:syb01100] syb_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:syb01100] syb_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:syb01100] syb_M00568   Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:syb01100] syb_M00569   Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:syb01100] syb_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:syb01100] syb_M00621   Glycine cleavage system [PATH:syb01100] syb_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:syb01100] syb_M00844   Arginine biosynthesis, ornithine => arginine [PATH:syb01100] syb_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:syb01100] syb_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:syb01100] syb_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:syb01100] syb_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:syb01100] syb_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:syb01100] syb_M00925   Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:syb01100] syb_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:syb01100] syb_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:syb01100] syb_M00970   Proline degradation, proline => glutamate [PATH:syb01100] Organism Sphingobium sp. YBL2 [GN:syb] Related pathway syb00010   Glycolysis / Gluconeogenesis syb00020   Citrate cycle (TCA cycle) syb00030   Pentose phosphate pathway syb00040   Pentose and glucuronate interconversions syb00051   Fructose and mannose metabolism syb00052   Galactose metabolism syb00053   Ascorbate and aldarate metabolism syb00061   Fatty acid biosynthesis syb00071   Fatty acid degradation syb00074   Mycolic acid biosynthesis syb00100   Steroid biosynthesis syb00130   Ubiquinone and other terpenoid-quinone biosynthesis syb00190   Oxidative phosphorylation syb00220   Arginine biosynthesis syb00230   Purine metabolism syb00240   Pyrimidine metabolism syb00250   Alanine, aspartate and glutamate metabolism syb00260   Glycine, serine and threonine metabolism syb00261   Monobactam biosynthesis syb00270   Cysteine and methionine metabolism syb00280   Valine, leucine and isoleucine degradation syb00290   Valine, leucine and isoleucine biosynthesis syb00300   Lysine biosynthesis syb00310   Lysine degradation syb00330   Arginine and proline metabolism syb00332   Carbapenem biosynthesis syb00340   Histidine metabolism syb00350   Tyrosine metabolism syb00360   Phenylalanine metabolism syb00361   Chlorocyclohexane and chlorobenzene degradation syb00362   Benzoate degradation syb00364   Fluorobenzoate degradation syb00380   Tryptophan metabolism syb00400   Phenylalanine, tyrosine and tryptophan biosynthesis syb00401   Novobiocin biosynthesis syb00410   beta-Alanine metabolism syb00430   Taurine and hypotaurine metabolism syb00450   Selenocompound metabolism syb00460   Cyanoamino acid metabolism syb00470   D-Amino acid metabolism syb00480   Glutathione metabolism syb00500   Starch and sucrose metabolism syb00520   Amino sugar and nucleotide sugar metabolism syb00521   Streptomycin biosynthesis syb00523   Polyketide sugar unit biosynthesis syb00540   Lipopolysaccharide biosynthesis syb00541   O-Antigen nucleotide sugar biosynthesis syb00543   Exopolysaccharide biosynthesis syb00550   Peptidoglycan biosynthesis syb00552   Teichoic acid biosynthesis syb00561   Glycerolipid metabolism syb00562   Inositol phosphate metabolism syb00564   Glycerophospholipid metabolism syb00600   Sphingolipid metabolism syb00620   Pyruvate metabolism syb00621   Dioxin degradation syb00622   Xylene degradation syb00623   Toluene degradation syb00625   Chloroalkane and chloroalkene degradation syb00626   Naphthalene degradation syb00627   Aminobenzoate degradation syb00630   Glyoxylate and dicarboxylate metabolism syb00633   Nitrotoluene degradation syb00640   Propanoate metabolism syb00643   Styrene degradation syb00650   Butanoate metabolism syb00660   C5-Branched dibasic acid metabolism syb00670   One carbon pool by folate syb00680   Methane metabolism syb00710   Carbon fixation by Calvin cycle syb00720   Other carbon fixation pathways syb00730   Thiamine metabolism syb00740   Riboflavin metabolism syb00750   Vitamin B6 metabolism syb00760   Nicotinate and nicotinamide metabolism syb00770   Pantothenate and CoA biosynthesis syb00780   Biotin metabolism syb00785   Lipoic acid metabolism syb00790   Folate biosynthesis syb00791   Atrazine degradation syb00860   Porphyrin metabolism syb00900   Terpenoid backbone biosynthesis syb00903   Limonene degradation syb00906   Carotenoid biosynthesis syb00907   Pinene, camphor and geraniol degradation syb00910   Nitrogen metabolism syb00920   Sulfur metabolism syb00930   Caprolactam degradation syb00946   Degradation of flavonoids syb00984   Steroid degradation syb00999   Biosynthesis of various plant secondary metabolites syb01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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