KEGG   PATHWAY: syb00010
Entry
syb00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Sphingobium sp. YBL2
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
syb00010  Glycolysis / Gluconeogenesis
syb00010

Module
syb_M00002  Glycolysis, core module involving three-carbon compounds [PATH:syb00010]
syb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:syb00010]
syb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:syb00010]
Other DBs
GO: 0006096 0006094
Organism
Sphingobium sp. YBL2 [GN:syb]
Gene
TZ53_20015  glucokinase [KO:K00845] [EC:2.7.1.2]
TZ53_19060  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
TZ53_21360  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
TZ53_12640  glpX; fructose 1,6-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
TZ53_20630  fructose-1,6-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
TZ53_15895  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
TZ53_20640  gapA; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
TZ53_20635  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
TZ53_20255  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
TZ53_25205  phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
TZ53_16790  eno; enolase [KO:K01689] [EC:4.2.1.11]
TZ53_03135  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
TZ53_19400  pyruvate phosphate dikinase [KO:K01006] [EC:2.7.9.1]
TZ53_00425  transketolase [KO:K00163] [EC:1.2.4.1]
TZ53_16800  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
TZ53_16805  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
TZ53_00420  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
TZ53_19895  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
TZ53_14875  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TZ53_19885  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TZ53_06485  alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
TZ53_23270  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
TZ53_16075  alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
TZ53_16210  zinc-binding dehydrogenase [KO:K13979] [EC:1.1.1.2]
TZ53_08425  dehydrogenase [KO:K00114] [EC:1.1.2.8]
TZ53_01910  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
TZ53_11105  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
TZ53_19615  betaine-aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
TZ53_18010  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
TZ53_05665  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
TZ53_08375  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
TZ53_23265  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
TZ53_03290  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
TZ53_08800  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
TZ53_08505  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
TZ53_20805  epimerase [KO:K01785] [EC:5.1.3.3]
TZ53_07870  aldose epimerase [KO:K01785] [EC:5.1.3.3]
TZ53_22175  aldose epimerase [KO:K01785] [EC:5.1.3.3]
TZ53_19435  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
TZ53_23990  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
TZ53_21910  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
syb00020  Citrate cycle (TCA cycle)
syb00030  Pentose phosphate pathway
syb00500  Starch and sucrose metabolism
syb00620  Pyruvate metabolism
syb00640  Propanoate metabolism
syb00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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