KEGG   PATHWAY: synk00195
Entry
synk00195                   Pathway                                
Name
Photosynthesis - Synechococcus sp. KORDI-100
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
synk00195  Photosynthesis
synk00195

Module
synk_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:synk00195]
synk_M00161  Photosystem II [PATH:synk00195]
synk_M00163  Photosystem I [PATH:synk00195]
Organism
Synechococcus sp. KORDI-100 [GN:synk]
Gene
KR100_10890  photosystem I reaction center subunit IX [KO:K02703] [EC:1.10.3.9]
KR100_02945  photosystem I reaction center subunit IX [KO:K02703] [EC:1.10.3.9]
KR100_04160  photosystem I reaction center subunit IX [KO:K02703] [EC:1.10.3.9]
KR100_03835  Photosystem II CP47 chlorophyll apoprotein [KO:K02704]
KR100_12385  Photosystem II reaction center protein [KO:K02705]
KR100_12380  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
KR100_14705  Photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
KR100_02315  psbE; cytochrome b559 subunit alpha [KO:K02707]
KR100_02310  psbF; cytochrome b559 subunit beta [KO:K02708]
KR100_02670  psbH; photosystem II reaction center protein H [KO:K02709]
KR100_02655  psbI; photosystem II reaction center I protein I [KO:K02710]
KR100_02300  Photosystem II reaction center protein J [KO:K02711]
KR100_02525  psbK; photosystem II reaction center protein K [KO:K02712]
KR100_02305  psbL; photosystem II reaction center L [KO:K02713]
KR100_03845  psbM; photosystem II reaction center protein M [KO:K02714]
KR100_02870  Photosystem II manganese-stabilizing polypeptide [KO:K02716]
KR100_07410  photosystem II oxygen evolving complex protein PsbP [KO:K02717]
KR100_03830  hypothetical protein [KO:K02718]
KR100_14430  psbU; photosystem II complex extrinsic protein precursor U [KO:K02719]
KR100_13310  psbV; cytochrome C550 [KO:K02720]
KR100_14020  Photosystem II reaction center X protein [KO:K02722]
KR100_01235  Photosystem II reaction center protein Z [KO:K02724]
KR100_05180  photosystem II reaction center Psb27 protein [KO:K08902]
KR100_09670  photosystem II reaction center protein Psb28 [KO:K08903]
KR100_03150  psaA; phosphorylase [KO:K02689] [EC:1.97.1.12]
KR100_03155  psaB; phosphorylase [KO:K02690] [EC:1.97.1.12]
KR100_01845  photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
KR100_03510  Photosystem I reaction center subunit II [KO:K02692]
KR100_14465  photosystem I reaction center subunit IV [KO:K02693]
KR100_03935  photosystem I reaction center subunit IV [KO:K02693]
KR100_04770  Photosystem I reaction center subunit III [KO:K02694]
KR100_04765  hypothetical protein [KO:K02697]
KR100_09035  Photosystem I reaction center subunit PsaK [KO:K02698]
KR100_03190  phosphorylase [KO:K02699]
KR100_06355  hypothetical protein [KO:K02699]
KR100_05415  Photosystem I reaction center subunit XII [KO:K02700]
KR100_04735  cytochrome F [KO:K02634]
KR100_03915  cytochrome B6 [KO:K02635]
KR100_04740  cytochrome B6 [KO:K02636] [EC:7.1.1.6]
KR100_03920  cytochrome B6 [KO:K02637]
KR100_12345  petM; cytochrome B6 [KO:K02643]
KR100_08365  petN; cytochrome B6 [KO:K03689]
KR100_11025  hypothetical protein [KO:K02638]
KR100_03100  ferredoxin [KO:K02639]
KR100_13535  ferredoxin [KO:K02639]
KR100_10305  ferredoxin [KO:K02639]
KR100_08960  ferredoxin [KO:K02639]
KR100_13320  ferredoxin [KO:K02639]
KR100_06375  ferredoxin [KO:K02639]
KR100_05970  ferredoxin--NADP reductase [KO:K02641] [EC:1.18.1.2]
KR100_11030  cytochrome C6 [KO:K08906]
KR100_11115  hypothetical protein [KO:K08906]
KR100_13465  F0F1 ATP synthase subunit epsilon [KO:K02114]
KR100_13460  F0F1 ATP synthase subunit beta [KO:K02112] [EC:7.1.2.2 7.2.2.1]
KR100_13550  F0F1 ATP synthase subunit gamma [KO:K02115]
KR100_13555  F0F1 ATP synthase subunit alpha [KO:K02111] [EC:7.1.2.2 7.2.2.1]
KR100_13560  F0F1 ATP synthase subunit delta [KO:K02113]
KR100_13565  hypothetical protein [KO:K02109]
KR100_13570  F0F1 ATP synthase subunit B' [KO:K02109]
KR100_13575  F0F1 ATP synthase subunit C [KO:K02110]
KR100_13580  F0F1 ATP synthase subunit A [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
synk00196  Photosynthesis - antenna proteins
synk00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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