KEGG   PATHWAY: vbo00920
Entry
vbo00920                    Pathway                                
Name
Sulfur metabolism - Variovorax boronicumulans
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
vbo00920  Sulfur metabolism
vbo00920

Module
vbo_M00021  Cysteine biosynthesis, serine => cysteine [PATH:vbo00920]
vbo_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:vbo00920]
Other DBs
GO: 0006790
Organism
Variovorax boronicumulans [GN:vbo]
Gene
CKY39_18460  sulfate ABC transporter substrate-binding protein [KO:K02048]
CKY39_18630  sulfate transporter subunit [KO:K23163]
CKY39_18455  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CKY39_18450  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CKY39_18445  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
CKY39_18600  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_18615  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_18620  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_09275  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_09310  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_18520  sulfonate ABC transporter substrate-binding protein [KO:K15553]
CKY39_09265  nitrate ABC transporter substrate-binding protein [KO:K15553]
CKY39_19325  ABC transporter substrate-binding protein [KO:K15553]
CKY39_09290  ABC transporter substrate-binding protein [KO:K15553]
CKY39_04920  nitrate ABC transporter substrate-binding protein [KO:K15553]
CKY39_09295  sulfonate ABC transporter permease [KO:K15554]
CKY39_18605  ABC transporter permease [KO:K15554]
CKY39_04930  ABC transporter permease [KO:K15554]
CKY39_19315  ABC transporter permease [KO:K15554]
CKY39_18595  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CKY39_04925  sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CKY39_09300  ABC transporter [KO:K15555] [EC:7.6.2.14]
CKY39_19320  mannosyltransferase [KO:K15555] [EC:7.6.2.14]
CKY39_18610  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CKY39_09280  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CKY39_18625  ssuE; FMN reductase (NADPH) [KO:K00299] [EC:1.5.1.38]
CKY39_18835  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
CKY39_18830  sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
CKY39_18825  phosphoadenylylsulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
CKY39_30925  soxA; sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
CKY39_30920  soxX; sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
CKY39_30935  soxY; thiosulfate oxidation carrier protein SoxY [KO:K17226]
CKY39_30930  soxZ; thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
CKY39_30915  soxB; thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
CKY39_30945  soxC; sulfite dehydrogenase [KO:K17225]
CKY39_30940  cytochrome C [KO:K22622] [EC:1.8.2.6]
CKY39_12545  oxidoreductase [KO:K00380] [EC:1.8.1.2]
CKY39_23700  nitric oxide synthase [KO:K00380] [EC:1.8.1.2]
CKY39_18815  nitrite reductase [KO:K00381] [EC:1.8.1.2]
CKY39_09785  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CKY39_16870  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CKY39_23165  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
CKY39_18570  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
CKY39_04305  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
CKY39_22620  cysteine synthase [KO:K01738] [EC:2.5.1.47]
CKY39_32965  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CKY39_08210  homoserine acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CKY39_00740  hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CKY39_24620  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
CKY39_17510  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
CKY39_28565  long-chain fatty acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
CKY39_10710  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
CKY39_13520  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
CKY39_04015  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
CKY39_27680  enoyl-CoA hydratase [KO:K20036] [EC:4.2.1.155]
CKY39_14475  enoyl-CoA hydratase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
vbo00260  Glycine, serine and threonine metabolism
vbo00270  Cysteine and methionine metabolism
vbo00680  Methane metabolism
vbo00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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