KEGG   PATHWAY: vca03030
Entry
vca03030                    Pathway                                
Name
DNA replication - Vibrio campbellii ATCC BAA-1116
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
vca03030  DNA replication
vca03030

Organism
Vibrio campbellii ATCC BAA-1116 [GN:vca]
Gene
M892_15020  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_16785  DNA polymerase III subunit alpha [KO:K02342] [EC:2.7.7.7]
M892_03755  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_01145  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_01825  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
M892_11770  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_14965  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
M892_15610  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
M892_16450  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
M892_06865  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
M892_14180  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
M892_13010  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
M892_10535  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
M892_12540  DNA helicase [KO:K02314] [EC:5.6.2.3]
M892_08635  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
M892_12685  single-stranded DNA-binding protein [KO:K03111]
M892_15015  ribonuclease H [KO:K03469] [EC:3.1.26.4]
M892_14960  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
M892_09960  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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