KEGG   PATHWAY: vca03430
Entry
vca03430                    Pathway                                
Name
Mismatch repair - Vibrio campbellii ATCC BAA-1116
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vca03430  Mismatch repair
vca03430

Other DBs
GO: 0006298
Organism
Vibrio campbellii ATCC BAA-1116 [GN:vca]
Gene
M892_13530  DNA mismatch repair protein MutS [KO:K03555]
M892_12130  DNA mismatch repair protein MutL [KO:K03572]
M892_08075  DNA mismatch repair protein [KO:K03573]
M892_10970  uvrD; DNA-dependent helicase [KO:K03657] [EC:5.6.2.4]
M892_02705  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
M892_07545  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
M892_07070  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
M892_08115  ssDNA exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
M892_12685  single-stranded DNA-binding protein [KO:K03111]
M892_14965  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
M892_10535  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
M892_15610  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
M892_06865  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
M892_16450  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
M892_15020  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_16785  DNA polymerase III subunit alpha [KO:K02342] [EC:2.7.7.7]
M892_03755  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_01145  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_01825  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
M892_11770  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
M892_13010  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
M892_14180  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
M892_12500  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

DBGET integrated database retrieval system