KEGG   PATHWAY: vil02010
Entry
vil02010                    Pathway                                
Name
ABC transporters - Virgibacillus phasianinus
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
vil02010  ABC transporters
vil02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Virgibacillus phasianinus [GN:vil]
Gene
CFK37_10135  ABC transporter substrate-binding protein [KO:K15553]
CFK37_10130  ABC transporter permease [KO:K15554]
CFK37_10125  nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CFK37_06270  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
CFK37_06265  modB; molybdate ABC transporter permease subunit [KO:K02018]
CFK37_06260  ABC transporter [KO:K02017] [EC:7.3.2.5]
CFK37_10355  iron ABC transporter substrate-binding protein [KO:K02012]
CFK37_10365  iron ABC transporter permease [KO:K02011]
CFK37_10360  spermidine/putrescine ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
CFK37_09390  glycine/betaine ABC transporter [KO:K02002]
CFK37_09535  glycine/betaine ABC transporter [KO:K02002]
CFK37_18490  ABC transporter substrate-binding protein [KO:K02002]
CFK37_00905  glycine/betaine ABC transporter [KO:K02002]
CFK37_00910  glycine/betaine ABC transporter [KO:K02001]
CFK37_18485  choline ABC transporter permease subunit [KO:K02001]
CFK37_18480  ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
CFK37_00915  glycine betaine/L-proline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
CFK37_15315  glycine/betaine ABC transporter permease [KO:K05845 K05846]
CFK37_06840  osmoprotectant ABC transporter substrate-binding protein [KO:K05845]
CFK37_06835  choline ABC transporter permease [KO:K05846]
CFK37_06845  amino acid ABC transporter permease [KO:K05846]
CFK37_15320  choline ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
CFK37_06830  glycine/betaine ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
CFK37_01025  sugar ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
CFK37_11125  ABC transporter substrate-binding protein [KO:K15770]
CFK37_11130  sugar ABC transporter permease [KO:K15771]
CFK37_11135  sugar ABC transporter permease [KO:K15772]
CFK37_08585  ABC transporter substrate-binding protein [KO:K17318]
CFK37_08575  sugar ABC transporter permease [KO:K17319]
CFK37_08580  sugar ABC transporter permease [KO:K17320]
CFK37_10615  ABC transporter substrate-binding protein [KO:K10236]
CFK37_10610  ABC transporter substrate-binding protein [KO:K10236]
CFK37_10620  ABC transporter permease [KO:K10237]
CFK37_10625  sugar ABC transporter permease [KO:K10238]
CFK37_11190  sugar ABC transporter substrate-binding protein [KO:K10200]
CFK37_08470  carbohydrate ABC transporter substrate-binding protein [KO:K10200]
CFK37_11195  ABC transporter permease [KO:K10201]
CFK37_08475  ABC transporter permease [KO:K10201]
CFK37_08480  ABC transporter [KO:K10202]
CFK37_11200  sugar ABC transporter permease [KO:K10202]
CFK37_15560  BMP family ABC transporter substrate-binding protein [KO:K07335]
CFK37_15550  branched-chain amino acid ABC transporter permease [KO:K23535]
CFK37_15545  sugar ABC transporter permease [KO:K23536]
CFK37_15555  heme ABC transporter ATP-binding protein [KO:K23537]
CFK37_10280  ABC transporter substrate-binding protein [KO:K17315]
CFK37_10285  sugar ABC transporter permease [KO:K17316]
CFK37_10290  ABC transporter permease [KO:K17317]
CFK37_09095  sugar ABC transporter permease [KO:K23509]
CFK37_09100  sugar ABC transporter permease YjfF [KO:K23509]
CFK37_09090  sugar ABC transporter ATP-binding protein [KO:K10820] [EC:7.5.2.9]
CFK37_14020  phosphate-binding protein [KO:K02040]
CFK37_14025  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CFK37_14030  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CFK37_14035  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CFK37_12485  glutamine ABC transporter substrate-binding protein [KO:K10036]
CFK37_12480  nickel transporter [KO:K10037]
CFK37_12475  peptide ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
CFK37_10845  amino acid ABC transporter substrate-binding protein [KO:K02424]
CFK37_10840  cysteine ABC transporter permease [KO:K10009]
CFK37_10835  ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA [KO:K10010] [EC:7.4.2.1]
CFK37_11990  methionine ABC transporter substrate-binding protein [KO:K02073]
CFK37_11985  methionine ABC transporter permease [KO:K02072]
CFK37_11980  methionine ABC transporter ATP-binding protein [KO:K02071]
CFK37_11650  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_05870  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_05875  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_10335  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_10430  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_07335  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_07345  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_10550  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_10660  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_18090  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_14460  peptide ABC transporter substrate-binding protein [KO:K15580]
CFK37_07350  peptide ABC transporter permease [KO:K15581]
CFK37_07355  peptide ABC transporter permease [KO:K15582]
CFK37_07360  peptide ABC transporter ATP-binding protein [KO:K15583]
CFK37_07365  peptide ABC transporter ATP-binding protein [KO:K10823]
CFK37_09245  glutathione ABC transporter substrate-binding protein GsiB [KO:K13889]
CFK37_09250  glutathione ABC transporter permease GsiC [KO:K13890]
CFK37_09255  glutathione ABC transporter permease [KO:K13891]
CFK37_17630  ferrichrome ABC transporter substrate-binding protein [KO:K23227]
CFK37_16795  ferrichrome ABC transporter substrate-binding protein [KO:K23227]
CFK37_16790  Fe3+-hydroxamate ABC transporter permease FhuB [KO:K23228]
CFK37_11920  adhesin [KO:K09815]
CFK37_11910  metal ABC transporter permease [KO:K09816]
CFK37_11915  zinc ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
CFK37_17930  BioY family transporter [KO:K03523]
CFK37_12295  BioY family transporter [KO:K03523]
CFK37_11305  biotin transporter BioY [KO:K03523]
CFK37_04240  BioY family transporter [KO:K03523]
CFK37_06685  hypothetical protein [KO:K16785]
CFK37_05310  transporter [KO:K16785]
CFK37_05320  energy-coupling factor transporter ATPase [KO:K16786] [EC:7.-.-.-]
CFK37_05315  energy-coupling factor ABC transporter ATP-binding protein [KO:K16787] [EC:7.-.-.-]
CFK37_08195  teichoic acid ABC transporter permease [KO:K09692]
CFK37_08200  hypothetical protein [KO:K09693] [EC:7.5.2.4]
CFK37_04930  ABC transporter permease [KO:K09813]
CFK37_04925  hemin ABC transporter ATP-binding protein [KO:K09814] [EC:7.6.2.-]
CFK37_19525  cell division protein FtsX [KO:K11632]
CFK37_19530  bacitracin ABC transporter ATP-binding protein [KO:K11631]
CFK37_11525  cell division protein FtsX [KO:K09811]
CFK37_11520  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
CFK37_01155  multidrug ABC transporter permease/ATP-binding protein [KO:K18889]
CFK37_16500  multidrug ABC transporter ATP-binding protein [KO:K18889]
CFK37_16495  multidrug ABC transporter ATP-binding protein [KO:K18890]
CFK37_01150  multidrug ABC transporter permease [KO:K18890]
CFK37_06980  multidrug ABC transporter ATP-binding protein [KO:K18887]
CFK37_00195  ABC transporter ATP-binding protein [KO:K18887]
CFK37_06975  ABC transporter [KO:K18888]
CFK37_00200  multidrug ABC transporter ATP-binding protein [KO:K18888]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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