KEGG   PATHWAY: vpd01100
Entry
vpd01100                    Pathway                                
Name
Metabolic pathways - Variovorax paradoxus B4
Class
Pathway map
vpd01100  Metabolic pathways
vpd01100

Module
vpd_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vpd01100]
vpd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vpd01100]
vpd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vpd01100]
vpd_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vpd01100]
vpd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vpd01100]
vpd_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vpd01100]
vpd_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vpd01100]
vpd_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:vpd01100]
vpd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vpd01100]
vpd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vpd01100]
vpd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vpd01100]
vpd_M00012  Glyoxylate cycle [PATH:vpd01100]
vpd_M00015  Proline biosynthesis, glutamate => proline [PATH:vpd01100]
vpd_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:vpd01100]
vpd_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vpd01100]
vpd_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vpd01100]
vpd_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:vpd01100]
vpd_M00021  Cysteine biosynthesis, serine => cysteine [PATH:vpd01100]
vpd_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vpd01100]
vpd_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:vpd01100]
vpd_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:vpd01100]
vpd_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:vpd01100]
vpd_M00026  Histidine biosynthesis, PRPP => histidine [PATH:vpd01100]
vpd_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:vpd01100]
vpd_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:vpd01100]
vpd_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:vpd01100]
vpd_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vpd01100]
vpd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vpd01100]
vpd_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vpd01100]
vpd_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vpd01100]
vpd_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vpd01100]
vpd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vpd01100]
vpd_M00063  CMP-KDO biosynthesis [PATH:vpd01100]
vpd_M00082  Fatty acid biosynthesis, initiation [PATH:vpd01100]
vpd_M00083  Fatty acid biosynthesis, elongation [PATH:vpd01100]
vpd_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:vpd01100]
vpd_M00087  beta-Oxidation [PATH:vpd01100]
vpd_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vpd01100]
vpd_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vpd01100]
vpd_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:vpd01100]
vpd_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:vpd01100]
vpd_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:vpd01100]
vpd_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:vpd01100]
vpd_M00122  Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:vpd01100]
vpd_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:vpd01100]
vpd_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vpd01100]
vpd_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:vpd01100]
vpd_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:vpd01100]
vpd_M00149  Succinate dehydrogenase, prokaryotes [PATH:vpd01100]
vpd_M00150  Fumarate reductase, prokaryotes [PATH:vpd01100]
vpd_M00151  Cytochrome bc1 complex respiratory unit [PATH:vpd01100]
vpd_M00155  Cytochrome c oxidase, prokaryotes [PATH:vpd01100]
vpd_M00156  Cytochrome c oxidase, cbb3-type [PATH:vpd01100]
vpd_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:vpd01100]
vpd_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:vpd01100]
vpd_M00168  CAM (Crassulacean acid metabolism), dark [PATH:vpd01100]
vpd_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:vpd01100]
vpd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vpd01100]
vpd_M00417  Cytochrome o ubiquinol oxidase [PATH:vpd01100]
vpd_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vpd01100]
vpd_M00531  Assimilatory nitrate reduction, nitrate => ammonia [PATH:vpd01100]
vpd_M00533  Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH:vpd01100]
vpd_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:vpd01100]
vpd_M00565  Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:vpd01100]
vpd_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:vpd01100]
vpd_M00569  Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA [PATH:vpd01100]
vpd_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vpd01100]
vpd_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:vpd01100]
vpd_M00621  Glycine cleavage system [PATH:vpd01100]
vpd_M00624  Terephthalate degradation, terephthalate => 3,4-dihydroxybenzoate [PATH:vpd01100]
vpd_M00793  dTDP-L-rhamnose biosynthesis [PATH:vpd01100]
vpd_M00844  Arginine biosynthesis, ornithine => arginine [PATH:vpd01100]
vpd_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:vpd01100]
vpd_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:vpd01100]
vpd_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vpd01100]
vpd_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:vpd01100]
vpd_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:vpd01100]
vpd_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:vpd01100]
vpd_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:vpd01100]
vpd_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:vpd01100]
vpd_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:vpd01100]
vpd_M00970  Proline degradation, proline => glutamate [PATH:vpd01100]
Organism
Variovorax paradoxus B4 [GN:vpd]
Related
pathway
vpd00010  Glycolysis / Gluconeogenesis
vpd00020  Citrate cycle (TCA cycle)
vpd00030  Pentose phosphate pathway
vpd00040  Pentose and glucuronate interconversions
vpd00051  Fructose and mannose metabolism
vpd00052  Galactose metabolism
vpd00053  Ascorbate and aldarate metabolism
vpd00061  Fatty acid biosynthesis
vpd00071  Fatty acid degradation
vpd00100  Steroid biosynthesis
vpd00130  Ubiquinone and other terpenoid-quinone biosynthesis
vpd00190  Oxidative phosphorylation
vpd00220  Arginine biosynthesis
vpd00230  Purine metabolism
vpd00240  Pyrimidine metabolism
vpd00250  Alanine, aspartate and glutamate metabolism
vpd00260  Glycine, serine and threonine metabolism
vpd00261  Monobactam biosynthesis
vpd00270  Cysteine and methionine metabolism
vpd00280  Valine, leucine and isoleucine degradation
vpd00290  Valine, leucine and isoleucine biosynthesis
vpd00300  Lysine biosynthesis
vpd00310  Lysine degradation
vpd00311  Penicillin and cephalosporin biosynthesis
vpd00330  Arginine and proline metabolism
vpd00332  Carbapenem biosynthesis
vpd00340  Histidine metabolism
vpd00350  Tyrosine metabolism
vpd00360  Phenylalanine metabolism
vpd00361  Chlorocyclohexane and chlorobenzene degradation
vpd00362  Benzoate degradation
vpd00364  Fluorobenzoate degradation
vpd00380  Tryptophan metabolism
vpd00400  Phenylalanine, tyrosine and tryptophan biosynthesis
vpd00401  Novobiocin biosynthesis
vpd00405  Phenazine biosynthesis
vpd00410  beta-Alanine metabolism
vpd00430  Taurine and hypotaurine metabolism
vpd00440  Phosphonate and phosphinate metabolism
vpd00450  Selenocompound metabolism
vpd00460  Cyanoamino acid metabolism
vpd00470  D-Amino acid metabolism
vpd00480  Glutathione metabolism
vpd00500  Starch and sucrose metabolism
vpd00520  Amino sugar and nucleotide sugar metabolism
vpd00521  Streptomycin biosynthesis
vpd00523  Polyketide sugar unit biosynthesis
vpd00525  Acarbose and validamycin biosynthesis
vpd00540  Lipopolysaccharide biosynthesis
vpd00541  O-Antigen nucleotide sugar biosynthesis
vpd00543  Exopolysaccharide biosynthesis
vpd00550  Peptidoglycan biosynthesis
vpd00552  Teichoic acid biosynthesis
vpd00561  Glycerolipid metabolism
vpd00562  Inositol phosphate metabolism
vpd00564  Glycerophospholipid metabolism
vpd00565  Ether lipid metabolism
vpd00592  alpha-Linolenic acid metabolism
vpd00600  Sphingolipid metabolism
vpd00620  Pyruvate metabolism
vpd00621  Dioxin degradation
vpd00622  Xylene degradation
vpd00623  Toluene degradation
vpd00624  Polycyclic aromatic hydrocarbon degradation
vpd00625  Chloroalkane and chloroalkene degradation
vpd00626  Naphthalene degradation
vpd00627  Aminobenzoate degradation
vpd00630  Glyoxylate and dicarboxylate metabolism
vpd00633  Nitrotoluene degradation
vpd00640  Propanoate metabolism
vpd00642  Ethylbenzene degradation
vpd00643  Styrene degradation
vpd00650  Butanoate metabolism
vpd00660  C5-Branched dibasic acid metabolism
vpd00670  One carbon pool by folate
vpd00680  Methane metabolism
vpd00710  Carbon fixation by Calvin cycle
vpd00720  Other carbon fixation pathways
vpd00730  Thiamine metabolism
vpd00740  Riboflavin metabolism
vpd00750  Vitamin B6 metabolism
vpd00760  Nicotinate and nicotinamide metabolism
vpd00770  Pantothenate and CoA biosynthesis
vpd00780  Biotin metabolism
vpd00785  Lipoic acid metabolism
vpd00790  Folate biosynthesis
vpd00791  Atrazine degradation
vpd00860  Porphyrin metabolism
vpd00900  Terpenoid backbone biosynthesis
vpd00906  Carotenoid biosynthesis
vpd00907  Pinene, camphor and geraniol degradation
vpd00910  Nitrogen metabolism
vpd00920  Sulfur metabolism
vpd00930  Caprolactam degradation
vpd00946  Degradation of flavonoids
vpd00999  Biosynthesis of various plant secondary metabolites
vpd01040  Biosynthesis of unsaturated fatty acids
vpd01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
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