KEGG   PATHWAY: xyk02010
Entry
xyk02010                    Pathway                                
Name
ABC transporters - Xylophilus rhododendri
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
xyk02010  ABC transporters
xyk02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Xylophilus rhododendri [GN:xyk]
Gene
GT347_02165  sulfate ABC transporter substrate-binding protein [KO:K02048]
GT347_00335  sulfate ABC transporter substrate-binding protein [KO:K23163]
GT347_02160  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
GT347_02155  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
GT347_02150  cysA; sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
GT347_26115  ABC transporter substrate-binding protein [KO:K15576]
GT347_18735  ABC transporter substrate-binding protein [KO:K15576]
GT347_26110  ntrB; nitrate ABC transporter permease [KO:K15577]
GT347_18740  ntrB; nitrate ABC transporter permease [KO:K15577]
GT347_26105  ATP-binding cassette domain-containing protein [KO:K15578] [EC:7.3.2.4]
GT347_18745  ATP-binding cassette domain-containing protein [KO:K15578] [EC:7.3.2.4]
GT347_07030  ABC transporter substrate-binding protein [KO:K15553]
GT347_02400  ABC transporter substrate-binding protein [KO:K15553]
GT347_01135  ABC transporter substrate-binding protein [KO:K15553]
GT347_01195  ABC transporter substrate-binding protein [KO:K15553]
GT347_01130  ABC transporter permease subunit [KO:K15554]
GT347_07035  ABC transporter permease subunit [KO:K15554]
GT347_07040  ABC transporter permease subunit [KO:K15554]
GT347_01190  ABC transporter permease subunit [KO:K15554]
GT347_07045  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
GT347_01185  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
GT347_01125  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
GT347_11600  solute-binding protein [KO:K02020]
GT347_10970  extracellular solute-binding protein [KO:K02020]
GT347_10995  solute-binding protein [KO:K02020]
GT347_15365  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
GT347_15370  modB; molybdate ABC transporter permease subunit [KO:K02018]
GT347_15360  ATP-binding cassette domain-containing protein [KO:K02017] [EC:7.3.2.5]
GT347_25730  putative 2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K02012]
GT347_25740  putative 2-aminoethylphosphonate ABC transporter permease subunit [KO:K02011]
GT347_25735  putative 2-aminoethylphosphonate ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
GT347_19285  ABC transporter permease subunit [KO:K05845 K05846]
GT347_26045  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
GT347_09495  hypothetical protein [KO:K07323]
GT347_09505  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
GT347_14360  MCE family protein [KO:K02067]
GT347_09510  mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE [KO:K02066]
GT347_14350  MlaE family lipid ABC transporter permease subunit [KO:K02066]
GT347_09490  STAS domain-containing protein [KO:K07122]
GT347_09515  ATP-binding cassette domain-containing protein [KO:K02065]
GT347_14355  ATP-binding cassette domain-containing protein [KO:K02065]
GT347_15460  BMP family ABC transporter substrate-binding protein [KO:K07335]
GT347_03425  BMP family ABC transporter substrate-binding protein [KO:K07335]
GT347_21100  BMP family ABC transporter substrate-binding protein [KO:K07335]
GT347_05995  BMP family ABC transporter substrate-binding protein [KO:K07335]
GT347_15470  ABC transporter permease [KO:K23535]
GT347_03440  ABC transporter permease [KO:K23535]
GT347_21090  ABC transporter permease [KO:K23535]
GT347_05985  ABC transporter permease [KO:K23535]
GT347_15475  ABC transporter permease [KO:K23536]
GT347_03445  ABC transporter permease [KO:K23536]
GT347_21095  ABC transporter permease [KO:K23536]
GT347_05980  ABC transporter permease [KO:K23536]
GT347_15465  ATP-binding cassette domain-containing protein [KO:K23537]
GT347_03435  ATP-binding cassette domain-containing protein [KO:K23537]
GT347_21085  ATP-binding cassette domain-containing protein [KO:K23537]
GT347_05990  ATP-binding cassette domain-containing protein [KO:K23537]
GT347_15210  carbohydrate ABC transporter substrate-binding protein [KO:K17321]
GT347_15195  ABC transporter permease subunit [KO:K17322]
GT347_15200  ABC transporter permease subunit [KO:K17323]
GT347_15185  ATP-binding cassette domain-containing protein [KO:K17324]
GT347_15190  ATP-binding cassette domain-containing protein [KO:K17325]
GT347_23050  ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [KO:K05813]
GT347_23045  ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA [KO:K05814]
GT347_23040  ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE [KO:K05815]
GT347_23035  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
GT347_21570  phosphate-binding protein [KO:K02040]
GT347_21575  phosphate-binding protein [KO:K02040]
GT347_02500  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
GT347_02495  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
GT347_02490  pstA; phosphate ABC transporter permease PstA [KO:K02038]
GT347_02485  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
GT347_03290  putative selenate ABC transporter substrate-binding protein [KO:K02044]
GT347_03300  ABC transporter permease subunit [KO:K02042]
GT347_03305  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
GT347_03295  ATP-binding cassette domain-containing protein [KO:K02041] [EC:7.3.2.2]
GT347_12380  transporter substrate-binding domain-containing protein [KO:K10001]
GT347_07785  transporter substrate-binding domain-containing protein [KO:K10001]
GT347_12535  transporter substrate-binding domain-containing protein [KO:K10001]
GT347_07775  ABC transporter permease subunit [KO:K10002]
GT347_07780  ABC transporter permease subunit [KO:K10003]
GT347_07770  ATP-binding cassette domain-containing protein [KO:K10004] [EC:7.4.2.1]
GT347_00950  ABC transporter permease subunit [KO:K09970]
GT347_00945  ABC transporter permease subunit [KO:K09971]
GT347_17050  ABC transporter substrate-binding protein [KO:K01999]
GT347_00205  ABC transporter substrate-binding protein [KO:K01999]
GT347_04645  ABC transporter substrate-binding protein [KO:K01999]
GT347_26145  ABC transporter substrate-binding protein [KO:K01999]
GT347_09265  ABC transporter substrate-binding protein [KO:K01999]
GT347_09370  ABC transporter substrate-binding protein [KO:K01999]
GT347_13435  ABC transporter substrate-binding protein [KO:K01999]
GT347_18025  ABC transporter substrate-binding protein [KO:K01999]
GT347_20040  ABC transporter substrate-binding protein [KO:K01999]
GT347_24350  ABC transporter substrate-binding protein [KO:K01999]
GT347_05365  ABC transporter substrate-binding protein [KO:K01999]
GT347_16775  ABC transporter substrate-binding protein [KO:K01999]
GT347_16850  ABC transporter substrate-binding protein [KO:K01999]
GT347_01650  transporter substrate-binding protein [KO:K01999]
GT347_17035  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_00130  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_04640  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_09270  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_09375  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_13425  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_18030  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_24345  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_05370  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_16845  ABC transporter permease [KO:K01997 K01998]
GT347_21245  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_16770  branched-chain amino acid ABC transporter permease [KO:K01997]
GT347_17040  ATP-binding cassette domain-containing protein [KO:K01995 K01998]
GT347_16765  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_21250  ABC transporter ATP-binding protein [KO:K01998]
GT347_00125  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_04635  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_09275  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_09380  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_13430  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_18035  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_05375  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_24340  branched-chain amino acid ABC transporter permease [KO:K01998]
GT347_00120  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_04655  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_09280  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_09385  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_13420  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_18040  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_24335  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_05380  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_16840  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_21255  ATP-binding cassette domain-containing protein [KO:K01995]
GT347_16755  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_16835  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_21260  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_17045  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_00115  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_04650  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_09285  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_09390  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_13440  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_18045  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_05385  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_24330  ATP-binding cassette domain-containing protein [KO:K01996]
GT347_25450  MetQ/NlpA family lipoprotein [KO:K02073]
GT347_25445  metI; methionine ABC transporter permease MetI [KO:K02072]
GT347_11340  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
GT347_18420  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
GT347_01640  transporter substrate-binding protein [KO:K11959]
GT347_11335  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
GT347_18425  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
GT347_01635  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
GT347_11330  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
GT347_18430  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
GT347_01630  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
GT347_11325  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
GT347_18435  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
GT347_01625  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
GT347_11320  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
GT347_18440  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
GT347_01620  ATP-binding cassette domain-containing protein [KO:K11963]
GT347_20845  gsiB; glutathione ABC transporter substrate-binding protein GsiB [KO:K13889]
GT347_20840  gsiC; glutathione ABC transporter permease GsiC [KO:K13890]
GT347_20835  gsiD; glutathione ABC transporter permease GsiD [KO:K13891]
GT347_20850  dipeptide ABC transporter ATP-binding protein [KO:K13892]
GT347_01720  ABC transporter substrate-binding protein [KO:K13893]
GT347_01715  ABC transporter permease subunit [KO:K13894]
GT347_01710  ABC transporter permease subunit [KO:K13895]
GT347_01705  dipeptide ABC transporter ATP-binding protein [KO:K13896]
GT347_10705  ABC transporter permease [KO:K09694]
GT347_10700  ATP-binding cassette domain-containing protein [KO:K09695]
GT347_06070  lipoprotein-releasing ABC transporter permease subunit [KO:K09808]
GT347_06065  lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
GT347_00225  lptF; LPS export ABC transporter permease LptF [KO:K07091]
GT347_00230  lptG; LPS export ABC transporter permease LptG [KO:K11720]
GT347_12125  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
GT347_03365  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
GT347_07800  ATP-binding cassette domain-containing protein [KO:K24821]
GT347_00300  ATP-binding cassette domain-containing protein [KO:K18893]
GT347_20690  ATP-binding cassette domain-containing protein [KO:K16012]
GT347_20695  cydD; thiol reductant ABC exporter subunit CydD [KO:K16013]
GT347_07620  macB; MacB family efflux pump subunit [KO:K05685] [EC:7.6.2.-]
GT347_13335  ATP-binding cassette domain-containing protein [KO:K02471]
GT347_18065  ATP-binding cassette domain-containing protein [KO:K02471]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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