PATHWAY: yru01100 Help Entry yru01100                    Pathway                                 Name Metabolic pathways - Yersinia ruckeri YRB Class BRITE hierarchy Pathway map yru01100   Metabolic pathways Module yru_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yru01100] yru_M00002   Glycolysis, core module involving three-carbon compounds [PATH:yru01100] yru_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yru01100] yru_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yru01100] yru_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:yru01100] yru_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yru01100] yru_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yru01100] yru_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:yru01100] yru_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yru01100] yru_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yru01100] yru_M00012   Glyoxylate cycle [PATH:yru01100] yru_M00015   Proline biosynthesis, glutamate => proline [PATH:yru01100] yru_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:yru01100] yru_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yru01100] yru_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:yru01100] yru_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:yru01100] yru_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:yru01100] yru_M00021   Cysteine biosynthesis, serine => cysteine [PATH:yru01100] yru_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:yru01100] yru_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:yru01100] yru_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:yru01100] yru_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:yru01100] yru_M00026   Histidine biosynthesis, PRPP => histidine [PATH:yru01100] yru_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:yru01100] yru_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:yru01100] yru_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yru01100] yru_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yru01100] yru_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yru01100] yru_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yru01100] yru_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yru01100] yru_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yru01100] yru_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:yru01100] yru_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yru01100] yru_M00063   CMP-KDO biosynthesis [PATH:yru01100] yru_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:yru01100] yru_M00082   Fatty acid biosynthesis, initiation [PATH:yru01100] yru_M00083   Fatty acid biosynthesis, elongation [PATH:yru01100] yru_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:yru01100] yru_M00087   beta-Oxidation [PATH:yru01100] yru_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:yru01100] yru_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:yru01100] yru_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:yru01100] yru_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:yru01100] yru_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:yru01100] yru_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:yru01100] yru_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:yru01100] yru_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:yru01100] yru_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:yru01100] yru_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:yru01100] yru_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:yru01100] yru_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:yru01100] yru_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:yru01100] yru_M00140   C1-unit interconversion, prokaryotes [PATH:yru01100] yru_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:yru01100] yru_M00149   Succinate dehydrogenase, prokaryotes [PATH:yru01100] yru_M00150   Fumarate reductase, prokaryotes [PATH:yru01100] yru_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:yru01100] yru_M00168   CAM (Crassulacean acid metabolism), dark [PATH:yru01100] yru_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:yru01100] yru_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yru01100] yru_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yru01100] yru_M00417   Cytochrome o ubiquinol oxidase [PATH:yru01100] yru_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:yru01100] yru_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:yru01100] yru_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:yru01100] yru_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:yru01100] yru_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:yru01100] yru_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:yru01100] yru_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:yru01100] yru_M00621   Glycine cleavage system [PATH:yru01100] yru_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yru01100] yru_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:yru01100] yru_M00761   Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:yru01100] yru_M00844   Arginine biosynthesis, ornithine => arginine [PATH:yru01100] yru_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:yru01100] yru_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:yru01100] yru_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:yru01100] yru_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:yru01100] yru_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:yru01100] yru_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:yru01100] yru_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:yru01100] yru_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yru01100] yru_M00970   Proline degradation, proline => glutamate [PATH:yru01100] Organism Yersinia ruckeri YRB [GN:yru] Related pathway yru00010   Glycolysis / Gluconeogenesis yru00020   Citrate cycle (TCA cycle) yru00030   Pentose phosphate pathway yru00040   Pentose and glucuronate interconversions yru00051   Fructose and mannose metabolism yru00052   Galactose metabolism yru00053   Ascorbate and aldarate metabolism yru00061   Fatty acid biosynthesis yru00071   Fatty acid degradation yru00130   Ubiquinone and other terpenoid-quinone biosynthesis yru00190   Oxidative phosphorylation yru00220   Arginine biosynthesis yru00230   Purine metabolism yru00240   Pyrimidine metabolism yru00250   Alanine, aspartate and glutamate metabolism yru00260   Glycine, serine and threonine metabolism yru00261   Monobactam biosynthesis yru00270   Cysteine and methionine metabolism yru00280   Valine, leucine and isoleucine degradation yru00290   Valine, leucine and isoleucine biosynthesis yru00300   Lysine biosynthesis yru00310   Lysine degradation yru00330   Arginine and proline metabolism yru00332   Carbapenem biosynthesis yru00340   Histidine metabolism yru00350   Tyrosine metabolism yru00360   Phenylalanine metabolism yru00361   Chlorocyclohexane and chlorobenzene degradation yru00362   Benzoate degradation yru00364   Fluorobenzoate degradation yru00380   Tryptophan metabolism yru00400   Phenylalanine, tyrosine and tryptophan biosynthesis yru00401   Novobiocin biosynthesis yru00410   beta-Alanine metabolism yru00430   Taurine and hypotaurine metabolism yru00440   Phosphonate and phosphinate metabolism yru00450   Selenocompound metabolism yru00460   Cyanoamino acid metabolism yru00470   D-Amino acid metabolism yru00480   Glutathione metabolism yru00500   Starch and sucrose metabolism yru00511   Other glycan degradation yru00520   Amino sugar and nucleotide sugar metabolism yru00521   Streptomycin biosynthesis yru00523   Polyketide sugar unit biosynthesis yru00525   Acarbose and validamycin biosynthesis yru00540   Lipopolysaccharide biosynthesis yru00541   O-Antigen nucleotide sugar biosynthesis yru00542   O-Antigen repeat unit biosynthesis yru00543   Exopolysaccharide biosynthesis yru00550   Peptidoglycan biosynthesis yru00552   Teichoic acid biosynthesis yru00561   Glycerolipid metabolism yru00562   Inositol phosphate metabolism yru00564   Glycerophospholipid metabolism yru00565   Ether lipid metabolism yru00592   alpha-Linolenic acid metabolism yru00600   Sphingolipid metabolism yru00620   Pyruvate metabolism yru00623   Toluene degradation yru00625   Chloroalkane and chloroalkene degradation yru00626   Naphthalene degradation yru00627   Aminobenzoate degradation yru00630   Glyoxylate and dicarboxylate metabolism yru00633   Nitrotoluene degradation yru00640   Propanoate metabolism yru00650   Butanoate metabolism yru00660   C5-Branched dibasic acid metabolism yru00670   One carbon pool by folate yru00680   Methane metabolism yru00710   Carbon fixation by Calvin cycle yru00720   Other carbon fixation pathways yru00730   Thiamine metabolism yru00740   Riboflavin metabolism yru00750   Vitamin B6 metabolism yru00760   Nicotinate and nicotinamide metabolism yru00770   Pantothenate and CoA biosynthesis yru00780   Biotin metabolism yru00785   Lipoic acid metabolism yru00790   Folate biosynthesis yru00860   Porphyrin metabolism yru00900   Terpenoid backbone biosynthesis yru00907   Pinene, camphor and geraniol degradation yru00910   Nitrogen metabolism yru00920   Sulfur metabolism yru00930   Caprolactam degradation yru00999   Biosynthesis of various plant secondary metabolites yru01040   Biosynthesis of unsaturated fatty acids yru01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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