KEGG   PATHWAY: yru00010
Entry
yru00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Yersinia ruckeri YRB
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yru00010  Glycolysis / Gluconeogenesis
yru00010

Module
yru_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yru00010]
yru_M00002  Glycolysis, core module involving three-carbon compounds [PATH:yru00010]
yru_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yru00010]
yru_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yru00010]
Other DBs
GO: 0006096 0006094
Organism
Yersinia ruckeri YRB [GN:yru]
Gene
BD65_925  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
BD65_1595  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BD65_1855  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
BD65_1330  pfkB; 1-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
BD65_2329  fructose-1-6-bisphosphatase family protein [KO:K03841] [EC:3.1.3.11]
BD65_1848  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
BD65_1290  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
BD65_1853  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
BD65_227  gap; glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
BD65_1291  phosphoglycerate kinase family protein [KO:K00927] [EC:2.7.2.3]
BD65_3054  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
BD65_2489  putative phosphoglycerate mutase gpmB [KO:K15634] [EC:5.4.2.11]
BD65_1908  gpmI; phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
BD65_2620  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
BD65_190  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
BD65_451  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
BD65_464  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
BD65_2580  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BD65_2581  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BD65_1813  pyridine nucleotide-disulfide oxidoreductase family protein [KO:K00382] [EC:1.8.1.4]
BD65_2582  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BD65_391  nifJ; ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
BD65_3136  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
BD65_250  aldehyde dehydrogenase family protein [KO:K04072] [EC:1.2.1.10 1.1.1.1]
BD65_2254  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BD65_3057  galM; galactose mutarotase [KO:K01785] [EC:5.1.3.3]
BD65_1948  yihX; phosphatase yihX [KO:K20866] [EC:3.1.3.10]
BD65_3008  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
BD65_226  aldose 1-epimerase family protein [KO:K01792] [EC:5.1.3.15]
BD65_2145  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BD65_2173  hypothetical protein [KO:K01222] [EC:3.2.1.86]
BD65_94  glycosyl hydrolase 1 family protein [KO:K01223] [EC:3.2.1.86]
BD65_610  glycosyl hydrolase 1 family protein [KO:K01223] [EC:3.2.1.86]
BD65_948  crr; glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
BD65_65  ptsG; PTS system glucose-specific EIICB component [KO:K02779] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yru00020  Citrate cycle (TCA cycle)
yru00030  Pentose phosphate pathway
yru00500  Starch and sucrose metabolism
yru00620  Pyruvate metabolism
yru00640  Propanoate metabolism
yru00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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