KEGG   PATHWAY: zju00195
Entry
zju00195                    Pathway                                
Name
Photosynthesis - Ziziphus jujuba (Chinese jujube)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
zju00195  Photosynthesis
zju00195

Module
zju_M00161  Photosystem II [PATH:zju00195]
zju_M00163  Photosystem I [PATH:zju00195]
Organism
Ziziphus jujuba (Chinese jujube) [GN:zju]
Gene
125420179  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
132800637  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
125419169  LOW QUALITY PROTEIN: photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
27963810  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
125419615  LOW QUALITY PROTEIN: photosystem II CP47 reaction center protein [KO:K02704]
27963875  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
27963835  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
27963834  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
27963864  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
27963863  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
27963878  psbH; photosystem II phosphoprotein [KO:K02709]
27963815  psbI; photosystem II protein I [KO:K02710]
27963861  psbJ; photosystem II protein J [KO:K02711]
27963814  psbK; photosystem II protein K [KO:K02712]
27963862  psbL; photosystem II protein L [KO:K02713]
27963829  psbM; photosystem II protein M [KO:K02714]
107424756  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
107416619  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
107413542  PsbP-like protein 1, chloroplastic isoform X2 [KO:K02717]
107431631  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
107428949  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
107421293  oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
107423325  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
132803851  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
27963876  psbT; photosystem II protein T [KO:K02718]
107425881  photosystem II reaction center W protein, chloroplastic [KO:K02721]
107428525  photosystem II core complex proteins PsbY, chloroplastic [KO:K02723]
27963837  psbZ; photosystem II protein Z [KO:K02724]
107416633  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
107434253  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
125420347  LOW QUALITY PROTEIN: photosystem I P700 chlorophyll a apoprotein A1-like [KO:K02689] [EC:1.97.1.12]
27963842  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
27963841  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
27963914  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
107423019  photosystem I reaction center subunit II, chloroplastic [KO:K02692]
107417894  photosystem I reaction center subunit IV, chloroplastic [KO:K02693]
107426460  photosystem I reaction center subunit IV A, chloroplastic [KO:K02693]
107418592  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
107417186  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
107404842  photosystem I reaction center subunit VI-2, chloroplastic [KO:K02695]
27963857  psaI; photosystem I subunit VIII [KO:K02696]
27963869  psaJ; photosystem I subunit IX [KO:K02697]
107415237  photosystem I reaction center subunit PsaK, chloroplastic [KO:K02698]
107412513  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
107425674  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
107409753  photosystem I subunit O [KO:K14332]
125419482  LOW QUALITY PROTEIN: cytochrome f [KO:K02634]
27963860  petA; cytochrome f [KO:K02634]
27963879  petB; cytochrome b6 [KO:K02635]
107416955  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
107430257  cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic [KO:K02636] [EC:7.1.1.6]
27963880  petD; cytochrome b6/f complex subunit IV [KO:K02637]
27963866  petG; cytochrome b6/f complex subunit V [KO:K02640]
27963828  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
107422616  plastocyanin [KO:K02638]
107403595  ferredoxin C 2, chloroplastic [KO:K02639]
107409976  uncharacterized protein LOC107409976 [KO:K02639]
125418110  ferredoxin, root R-B1 [KO:K02639]
107423176  ferredoxin C 1, chloroplastic [KO:K02639]
107415178  ferredoxin [KO:K02639]
107407767  ferredoxin--NADP reductase, root isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
107424409  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic isoform X1 [KO:K02641] [EC:1.18.1.2]
107420103  cytochrome c6, chloroplastic [KO:K08906]
125419846  LOW QUALITY PROTEIN: ATP synthase epsilon chain, chloroplastic-like [KO:K02114]
27963853  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
125419248  LOW QUALITY PROTEIN: ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
125423826  LOW QUALITY PROTEIN: ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
27963854  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
107432905  ATP synthase gamma chain, chloroplastic [KO:K02115]
107421010  ATP synthase gamma chain, chloroplastic [KO:K02115]
27963819  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
27963820  atpF; ATP synthase CF0 subunit I [KO:K02109]
107421175  ATP synthase subunit b', chloroplastic [KO:K02109]
27215278  atp8; ATPase subunit 8 [KO:K02109]
27963821  atpH; ATP synthase CF0 subunit III [KO:K02110]
132799983  ATP synthase subunit a, chloroplastic [KO:K02108]
27963822  atpI; ATP synthase CF0 subunit IV [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
zju00196  Photosynthesis - antenna proteins
zju00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

DBGET integrated database retrieval system