Phocoenobacter atlanticus: KGI96_10360
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Entry
KGI96_10360 CDS
T07499
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
patl
Phocoenobacter atlanticus
Pathway
patl03030
DNA replication
patl03410
Base excision repair
patl03420
Nucleotide excision repair
patl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
patl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGI96_10360 (ligA)
03410 Base excision repair
KGI96_10360 (ligA)
03420 Nucleotide excision repair
KGI96_10360 (ligA)
03430 Mismatch repair
KGI96_10360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
patl03032
]
KGI96_10360 (ligA)
03400 DNA repair and recombination proteins [BR:
patl03400
]
KGI96_10360 (ligA)
Enzymes [BR:
patl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KGI96_10360 (ligA)
DNA replication proteins [BR:
patl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KGI96_10360 (ligA)
DNA repair and recombination proteins [BR:
patl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KGI96_10360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGI96_10360 (ligA)
MMR (mismatch excision repair)
DNA ligase
KGI96_10360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGI96_10360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QVE20704
LinkDB
All DBs
Position
2145460..2147484
Genome browser
AA seq
674 aa
AA seq
DB search
MSSLIQQITELKEKLREYEYHYHVLDNPIVPDAEYDRLMNTLKQLEKDNPELITTDSPTQ
RVGAKPLDGFNQVTHKVPMLSLDNAFSDNELEAFLRRIKDRGAVNTSSLEFCCEPKLDGL
AVSILYEDGILTQAATRGDGAVGEDITANIRTIRNIPLKLNMTNPPASLEVRGEVFMPQK
GFDLLNKNALAKGEKSFANPRNAAAGSLRQLDPKITRSRPLVLNAYGIGVYQSEQPLPDT
HFARLQWLKSIGIPVNNEIMLAKGIEGLLAFYHSIAQKRNSLGYDIDGTVLKINDIKLQE
QLGFVSKAPRWAIAYKFPAQEEMTVLKDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL
HNGDEIARLGVCIHDTVIIRRAGDVIPQIVGVVLEHRPEFAKSIHFPTACPECGSTIIRV
EGEAVARCTGGLFCNAQRKEVLKHFVSRKAMDIDGVGVKLIEQLMEKELLHTPADLFKLE
KETLSRLERMGEKSATNSLQSIEKSKSTTLARFLFSLGIREVGEATALNLANHFGTLDAI
RQANVEQLKEVPDVGEIVANHIYRFWLEPHNVAVVEELIALGVHWEDVVLQEVKDNPLKD
KNVVLTGSLSQLTRDQAKALLQSYGCKVSGSVSGKTDFLIAGEKAGSKLTKAQELGIKIL
SEQDLIDLTNEFST
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcactaatacaacaaattactgaattaaaagaaaaattacgagaatacgaatat
cattatcacgtactagataatccaatcgtaccagatgctgagtatgatcgtttaatgaat
acactcaaacagcttgaaaaagacaatccagagttaattacaacagattctcccacacaa
cgagtgggtgcaaaacccttagatggatttaaccaagttactcacaaagtgccaatgctc
tcgttagacaatgccttttctgataatgaattagaggcttttttacgtcgaattaaagat
agaggagcagtaaatacttcctcacttgaattttgctgtgaaccaaagctagatggttta
gcggtcagtattttgtatgaagatggaatattaacccaagcagcaactcgaggcgatggt
gcagttggggaggatattactgccaatattcgtactattcgtaatattccattaaagctt
aatatgacaaatcctcctgccagtttagaggttcgtggtgaggtatttatgcctcaaaag
gggtttgatttattaaataaaaacgcactagcaaagggtgaaaaaagctttgctaatcca
cgtaatgctgccgcaggttcattacgccaacttgatcctaaaattactcgctctagacca
ttagttttaaatgcttatggaatcggtgtttatcaaagtgagcaaccacttcctgacact
cattttgctcgtttacagtggttaaaatctattggtattcccgtcaataatgaaattatg
cttgcaaaaggaatagaaggcttattggcgttttatcattctattgcacaaaaacgtaat
tctctcggttacgatattgatggtacagtgttaaaaatcaatgacattaaattacaagag
caattaggttttgtttctaaagcacctcgttgggcaattgcctataaatttcctgctcaa
gaagagatgacggtgttaaaggatgttgagtttcaagtggggcgaacaggggcgataacg
cctgttgcaaaattagagcctgtttttgtggcgggagtgacggtgagtaatgcaacattg
cacaatggtgatgaaattgctcgtttaggtgtctgtattcacgacactgtgattattcgt
cgtgcaggtgatgttattccacaaattgtaggagttgtattggaacatcgccctgaattt
gcaaaaagtattcattttcctaccgcttgccctgaatgtggctcaaccattattcgtgtt
gaaggtgaagcagtggctcgttgtactggtggtctgttttgtaacgcacaacgtaaagaa
gttttaaaacattttgtttctcgcaaggcaatggatattgatggtgttggtgtaaaattg
attgaacaattaatggaaaaagagttgctccacacccctgcagatttgtttaaattagaa
aaagaaaccttgtctaggctagaaagaatgggggagaaatcagcgactaattctctacaa
agtattgaaaaatcgaaatcaactacccttgcccgttttttattttcacttggcattcga
gaagtgggcgaagcaaccgcactgaatttagctaatcattttggaacactagatgctatt
cgccaagctaatgttgaacagttgaaagaggtgccagatgttggtgaaattgtagcaaat
catatttatcgtttttggttagagccacataatgtcgctgtagttgaagagttgattgca
ttgggcgttcattgggaagatgttgtattacaagaggttaaagacaatccattaaaagat
aagaatgtcgtactaacaggctctctttcacagttaacacgtgatcaggcaaaagcattg
ctacaaagttatggatgtaaagtttctggcagtgtatcaggtaagacagattttctaatt
gcaggagaaaaggcaggctcaaaattaactaaagcccaagagcttggaattaaaatactc
agtgagcaagatttaattgatttaaccaatgaatttagtacttaa
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