Phragmites australis (common reed): 133883256
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Entry
133883256 CDS
T10575
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133883256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133883256
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133883256
Complex C
U5 SnRNP specific factors
133883256
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Ras
Septin
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
133883256
NCBI-ProteinID:
XP_062178513
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All DBs
Position
10:complement(4971751..4977553)
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AA seq
994 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDAAGSPSPSASRSPSPSARSLSGSPSRPVALMDVD
DDEDADPSQQAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEMPIVAPPRVVKFEVG
TRAGATSTYASTDFLLGLAGNPALVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDSEGE
RHVRFTDTRVDEQERQVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAALRLA
DGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPNDAYFKLRHTL
EAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGVQFDHEKF
ASRLWGDLYFHPDSRTFKKKPPKEGANRSFVEFILEPLYKIYSLVVGEQKINVESKLAEL
GVTLSNAAYKLNVRPLLRLACRSIFGTATGFTDMLVKHIPSVKDAAARKIDHIYTGPQDS
SVVDAMKKCDPLGPLMVNVTKLYPKSDCSVFDAFGRIYSGTIQTGQTVRVLGEGYSPDDE
EDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMNMDEDVYIFRP
LRFNTLSVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDS
IMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAED
IENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDTLSVEVDKNLL
NAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSA
FLMANPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYIVKAFLPVIE
SFGFETDLRYHTQGQAFCLSIFDHWAIVPGDPLDKSIVLRPLEPAPMQHLAREFMVKTRR
RKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggtaactacatcggaccggagctcgccgactcc
gacgccgatgactccgacgccgccggctccccgtccccctccgcgtcccgctcgccgtcc
ccttccgcgcggtccctgtcaggctccccctcccgccccgtggccctcatggacgtcgac
gacgacgaggacgccgacccgtcccagcaggccgtggtgctcgccgaggacaagaagtac
taccccaccgccgaggaggtgtacggcccgggcgtagaggctctcgtcatggacgaggac
gagcaaccgctcgagatgcccatcgttgcgccgccccgcgtcgtgaagtttgaggtcggc
acccgcgccggggccacatccacctacgcctccactgacttcctcctcggcctcgcgggt
aaccccgcgctggtgcgcaacgtggccctcgtcggccacctgcagcacgggaagacggtg
ttcatggacatgctcgtggagcagacgcacgaggtggacacgttcgactccgagggggag
cggcacgtgaggttcaccgacacacgggttgacgagcaggagcggcaggtctccatcaag
gccgtgcccatgtccctcgttctcgaagggggaaatggcaagtcgtacctgtgcaatatc
atggacacgccggggcatgtcaatttctccgatgagatgaccgccgcgctgcggcttgcg
gatggggccgtgcttgttgttgatgctgctgagggtgtgatggtaaacactgagagggca
attcgtcatgcaatccaagaaagacttcccattgttgttgtgattaacaaggttgacaga
ttgataacagagctaaagctgcccccaaatgatgcatatttcaagctgcggcatacactg
gaggcgatcaatgatcttatctcatcgtgttctactacagtaggtgggactcaactggtg
gatcctgctgctggaaatgtctgttttgcaagtggttctgctggctggtcttttacctta
cagtcctttgcacatctttatttaaagattcatggggttcaatttgatcatgagaagttt
gcatctcgtctatggggggacttgtattttcaccctgattctagaaccttcaaaaagaag
ccaccaaaggaaggagctaatagatcatttgtggaatttatccttgagcctttgtacaaa
atttatagtctagttgttggcgagcaaaagataaatgttgaatcaaagcttgctgaatta
ggcgtcaccctgagcaatgcggcttataagcttaatgttaggcctttgctgagactagct
tgtcgctcaatttttggcactgctactgggtttactgacatgctggtgaaacacattccc
tctgtgaaggatgctgctgcaaggaaaatagaccacatatacactggtccgcaagattcc
tctgttgtggatgctatgaaaaaatgcgatcctcttgggccccttatggttaatgttaca
aagctatatcccaagtctgattgcagtgtctttgatgcctttggacgaatttatagtggc
acaatacagactggacagactgtgagggtccttggagagggctattctcctgatgatgaa
gaggatatgactgtcaaagaggtgaccaaattgtgggtttatcaggcacggtatcgtgtt
ccaattagtaaagcccctgctggttcttgggttcttattgaaggtgtagatgcgtcgatc
atgaaaactgctactatatgtcctatgaacatggatgaagatgtgtacatatttagacct
ctacgcttcaataccttgtccgttgtaaaaatagcggctgagcctcttaacccaagtgag
ctccctaagatggtggaaggtctccgtaaaatcagcaaaagctatcctcttgctattact
aaggtagaagagtctggggaacacactatacttgggactggtgagctatatctggactct
ataatgaaggacctcagagagctttattcggaggtagaagtgaaggttgcagatccagtc
gtgacattttgtgaaacggttgttgatacttcttcaatgaaatgttttgctgaaacacct
aacaagaggaacaaaattactatggttgctgaaccactagagaagggcttggcagaagat
attgagaatggtcttgttagccttgattcaaggcagaaagaaatcactgatttctttcgc
caacgctaccagtgggatgtccttgcggcaaggtcaatatgggcttttggacctgacaag
cagggtcctaacattctgctagacgacacactttcagtagaggttgataaaaacttgctc
aatgcagtcaaagattcaattgttcaaggatttcagtggggtgctagagaaggtcctttg
tgtgatgaaccaattaggaatgtgaagttcaagatcttaaatgcaaacatagctccagag
ccattgcaccgtggtggtggtcagataattcccacggcacgtcgggttgtctattctgca
ttcctaatggctaatcctcgccttatggagcctgtctattacgttgagatccagacccca
attgactgtgtctctgctatttatacggtgctatcccgacgacgtggacatgtaacagct
gatgtacctaagccaggcactccaatctacattgttaaggcatttttacctgtcatagag
tcttttggattcgagacagacctcagataccatacacagggacaagcattttgtctgtca
atatttgatcactgggctatcgttcctggagatcctttagacaagagcattgtcctccgg
cctctggaaccggcacctatgcagcaccttgctcgtgagttcatggtaaagaccaggcgg
aggaagggcatgagtgaggatgtgagcatcaataagttcttcgacgaggccatgatgaac
gagctggctcaacaggctgctgatctccatttgcaaatgatgtag
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