Phragmites australis (common reed): 133884730
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Entry
133884730 CDS
T10575
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
133884730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133884730
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133884730
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
133884730
NCBI-ProteinID:
XP_062180247
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Position
11:31177906..31183806
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AA seq
879 aa
AA seq
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MVHRHFYKHRCSSPPCSFPSPLYSLVAAAMGIPSFYKWLVNRYPSILSPAKEEPADSSKE
SHDGDGIIYDNLYLDMNGIIHQCFHPQDQMHTHIHVPPTTLDEVFESMFEYMDNLFRIVR
PRRLLYLAVDGVAPCAKMNQIRRGRFHSARQARYEEMEEDRLREELRAEGKEVPPREISE
VSDPNVITPGTEFMEKLSQALEHYIRARLNSDPGWKDIMVILSDANVPGEGEHKIMSFIR
AQRSMEGYDPNTRHCLYGHDADLIMLALASHEVHFSILREDVRLPNQAENNSRFTEANPK
KPYLFLNIWVLREYLEIELKIQDPVCELDIERLIDDFIFICFLMGNDFVPHIPSLKMQEA
CFAVDLLIEVYKTTFNKMGGYIVDTDKVKYEHAAYLEVSRLEMFFHELSMYEEKIFLKRY
ELQQDSLQKLYRDLLREASESERLELRRKLQDVLFNEERPYDSIRLGLPGWKSRFYKEYF
GVETSNEIGKLQNDMAQKYLEGLCWVLQCYFADVPSWSWYYPFYVAPFVSDLKGLSRFKI
SFTVDKPLRPFDQLMAVLPLRSQCALPECYRKLMVSKYSEIQTLYPKLETDMNGKRFLWN
GISEELLLSATKTADEELATHEMRRNTTRQEKIFLQRGSSALPHNEIIMQSSYCSPIDSA
TSRIGGWLSTDDDDGLRNGFFLSPQQNLQGITNDQAISATFFNPEAVNPIPGLLGNVRVP
DKTVTAADISKRPLWHTYPGSRPPPPIVQRPDTIWKLSTPATPREEHKNAGTGWMGRGRV
NAAETTQLTRSSSYGHGVGNGTAGAETQQSSSSSSSYSYRNGVHRVDMVQSRGSSSRFEK
DGAYSFRPHGGAPWRGDGGCGGGRNGGAGHGGSAQPRGW
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggtgcatcgtcatttttacaaacaccgctgctcctcacccccctgtagcttcccatca
cccctctactctctcgttgcagctgccatgggaataccttctttctacaagtggctcgtg
aacagatacccaagcatcctctcccccgcaaaggaggagccagctgacagcagcaaggaa
agccatgatggtgatggcatcatctacgacaacctctacctcgacatgaatggcatcatc
catcagtgcttccacccgcaggaccagatgcatacacacatacatgttcctccgacgacg
ctcgacgaggtgttcgagtccatgttcgagtacatggacaacttgttccgcatcgtcagg
ccgagaaggcttctctacttggcagtagatggcgttgctccttgcgccaaaatgaaccaa
atacgaaggggacgtttccacagtgccaggcaagctagatatgaggagatggaagaggat
cgcttgcgggaggagctcagagctgaagggaaggaggtgccaccgcgagagatatccgag
gtttcagatcctaatgtcatcacaccagggacagaattcatggagaagctgtcacaagcg
ctcgagcactacatccgtgccagattgaatagtgaccccgggtggaaagacatcatggta
atactctccgatgcaaatgttcctggagaaggagagcacaagatcatgtctttcatccgc
gcgcaacgcagcatggaaggctatgatcccaacactcgacactgtttgtatgggcatgat
gcggatctgataatgctggccttggcatctcacgaagtccacttctctattttgcgtgag
gatgtgcggcttccaaatcaggcagaaaataattcccggttcacagaagcaaatccgaag
aaaccatacctgtttttgaacatatgggttctgagagagtacttggagattgaactgaag
atacaggacccagtttgcgagcttgatattgagaggctaatagatgacttcatctttatt
tgtttcttgatggggaacgatttcgtcccgcatattccgtcacttaagatgcaagaggca
tgttttgcagttgatcttctcatcgaagtgtacaaaacaaccttcaacaaaatggggggt
tatattgtcgacacagacaaagtcaaatatgaacatgctgcatatctggaagtctcaagg
ttggaaatgttttttcatgaactgtccatgtatgaagagaaaatttttctcaaaagatat
gaactgcaacaggattccttgcagaagttatatcgcgatctattgcgtgaagcttcagaa
agtgaaagattagagctgaggcgaaaattacaggacgtcctttttaatgaagaacgtcca
tatgacagtataagactgggattaccaggatggaaatcccggttctacaaggaatacttt
ggtgtcgaaacttctaatgagattggaaagctacagaacgacatggctcagaagtattta
gaagggctttgttgggtgcttcaatgctatttcgctgatgtaccatcatggagctggtac
tacccattctacgttgctcctttcgtatctgatctcaaaggtctttctcggttcaagata
tctttcactgtggacaaaccactaagaccatttgatcagctcatggcagttttgccacta
cgaagccagtgtgctctcccagaatgctaccgcaaattaatggtctctaagtattctgaa
atacaaacgctctatccgaagttggagactgacatgaatgggaaacgtttcttgtggaat
ggtatctctgaggaactgcttctttcggccaccaaaacggcagacgaagagctcgcgacg
catgagatgagacggaatactactcggcaagaaaagatctttctgcagaggggctcaagc
gctctgccacataacgaaattattatgcaatcatcatactgttcaccgatagattcagct
acgagcagaattggagggtggttgtcgactgatgacgatgatggcttgaggaacggtttc
tttctctcgccccaacaaaatctgcagggcatcacgaatgatcaggcaatatcagccacg
ttcttcaaccctgaggcagtgaatccaattccaggactacttggcaatgtcagggtacct
gacaagactgtgacggcagctgacatctcaaagaggccgctctggcacacgtacccgggc
tcaaggccgccgccgcccatcgttcagaggccggacactatctggaagctgagcacgccg
gcgacgccgcgggaagagcacaagaacgccggcacggggtggatggggcgggggagagtg
aacgccgccgagacgacgcagctgaccaggagcagcagctacgggcatggggtagggaac
ggcaccgccggcgccgagacgcaacagagcagcagcagcagcagcagctacagctacagg
aatggtgtccatcgggtggacatggtgcagagccgaggaagcagcagcaggtttgagaag
gacggtgcatacagtttccgaccgcatggaggtgcgccgtggagaggagacggcggctgt
ggcggcggcaggaatggaggcgccggccatggcgggagcgcgcagccacgtggctggtag
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