Phragmites australis (common reed): 133885506
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Entry
133885506 CDS
T10575
Name
(RefSeq) transcription factor APG-like
KO
K12126
phytochrome-interacting factor 3
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133885506
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133885506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133885506
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133885506
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Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
133885506
NCBI-ProteinID:
XP_062181212
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Position
11:complement(2393663..2396701)
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AA seq
508 aa
AA seq
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MSGPGDELPGLLRDNGPALKRAPNFPLAPFQPFTCSAAGSSRAHELKRHAAAAADAKAGA
FMSMSSVPLGAASGMHDIGLGGLPVQDDDDSVPWLHCPVVDDGDSDTAPLPPDYCAGLLS
EYSGLPAAPAASHGAVVPTTRAVLPETAAKQNPPIAAGGGESVMNFTFFSRPLQRPQAST
AASPSNPVESTAVQTAANRLRSTPLFSEQRMAWLQPPKGPRTTTAVAPPAPQAPLAPDHH
HVETAATVTQHRLQPEARPPDALTAATAAVTTSSVCSANGDRSQPKMSSHQPAECSFSQD
EDLDDEPGEMRRSAARSTKRTRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASM
LEEAIEYLKTLQLQVQMMSMGTGMCVPPMLLPAAAAMQHLQMPPMAHFPHLGAMGLGFGM
GTLPRFAGAQFPCPVFPGAPPMAMPPGSMFGITGQAMPPLAFPHMAQTALAEQMEAAAPA
RGGAGAGDHPPLPVVPQGDQKLQHPKQT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcccggcgacgagctgcccgggctgctgcgggacaacgggccggcgctgaag
agggcgccgaacttcccgctggcgccgttccagcccttcacctgcagcgccgccggcagc
agcagggcccacgagctcaagcgccacgccgccgccgccgcggacgccaaggcgggcgcg
ttcatgagcatgagctccgtgcccctgggcgcggcctcggggatgcacgacatcggcctc
ggcggcctccccgtccaggacgacgacgactccgtgccgtggctgcattgccccgtcgtc
gacgacggcgacagtgatacggcgccgctgcccccggactactgcgccggcttgctgtcc
gagtactcgggacttccggccgcgccggcggcctcccacggcgcggtcgtcccgaccaca
cgcgccgtgctgccggaaactgcagccaagcagaacccgccaattgccgccggcggaggc
gagagcgtcatgaacttcacgttcttctcgaggcctcttcagcgaccacaggcttccacc
gccgcgtccccaagcaaccccgtcgagtccacggccgtgcagacggcggcgaaccggctg
aggagcaccccattgttctccgagcagaggatggcatggctgcagccgcccaaggggcca
cgcaccacaacggcagtcgcacctcctgctccccaggcgccgctggccccagatcaccac
catgtcgaaacagccgccacggtaactcaacacaggttgcaaccagaagcaaggccgccc
gatgcgttaaccgcggcgacggcggcggtgacgacctcgtcggtatgttccgccaacggt
gaccgtagccaaccgaagatgagcagccaccagcccgcagagtgttcgttcagccaggac
gaggacctcgacgacgagcccggcgagatgaggagatcggcggcgaggagcacgaagcgc
acccgcaccgctgaagtgcacaacctatcggagaggaggagacgggaccggatcaacgag
aagatgcgcgccctgcaggagctcatccccaactgcaacaagattgacaaggcgtcgatg
ctggaggaggccatcgagtacctgaaaactctgcagctccaagtgcagatgatgtcgatg
gggaccgggatgtgcgtgccgccgatgctgctgcctgccgcggcggcgatgcagcacctg
cagatgcctccgatggcgcacttcccccacctcggcgccatggggctggggttcggcatg
ggcaccctcccgcgcttcgccggcgcgcagttcccgtgcccggtgttccccggcgcgccg
ccgatggcaatgcctcccggctcgatgttcggcattaccgggcaagcaatgccaccattg
gcgttccctcacatggcccaaaccgcgctggccgagcagatggaagctgccgctcctgca
cggggaggagcaggcgccggcgaccatccaccgctccccgtcgttccccagggcgatcag
aagctgcagcatccgaagcaaacgtga
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