KEGG   Phragmites australis (common reed): 133890977
Entry
133890977         CDS       T10575                                 
Name
(RefSeq) uncharacterized protein LOC133890977
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
paua  Phragmites australis (common reed)
Pathway
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133890977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133890977
   03041 Spliceosome [BR:paua03041]
    133890977
   03032 DNA replication proteins [BR:paua03032]
    133890977
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     133890977
Spliceosome [BR:paua03041]
 Complex A
  U1 snRNP components
   Sm proteins
    133890977
  U2 snRNP components
    133890977
 Complex B
  U1 snRNP components
    133890977
  U4/U6.U5 tri-snRNP components
    133890977
 Complex C
  U2 snRNP components
    133890977
DNA replication proteins [BR:paua03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     133890977
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 133890977
NCBI-ProteinID: XP_062187628
LinkDB
Position
14:3903252..3907576
AA seq 261 aa
MSNPRGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKTT
GDREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGALAGPGVGRAAGRGMPTG
PLLHAAPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAPPVAYPQVVRPPPGQMVPPMRP
GMPPQMPMQFQRPPAPFPGGPPQQFMRGPPPMGPPQVRPGMPGPPPPGMRPGMPPPPFGQ
HRPGMPPPPPGPQQPGQNPPQ
NT seq 786 nt   +upstreamnt  +downstreamnt
atgtcgaaccctagaggatccaagatgctccagttcatcaactaccgcatgcgcgtgacg
atccaggacggccgccagctcgtgggcaagttcatggccttcgaccgccacatgaatctc
gtcctcggcgactgcgaggagttccgccgcctcccgccctccaagtcctccaagaccact
ggcgaccgcgaggagcgccgcacgctcggcctcctcctcctccgcggcgaggaggtcgtc
tccatgaccgtcgagggcccgccgccgcccgacgagtcccgcgccaaggccgccgcggcc
gggggcgcgctcgcgggcccgggtgttgggcgcgctgccggacgtgggatgcccaccggc
ccgctgctccatgccgctccgggcctcgcgggaccggtcaggggcgtcggcgggcctgcc
cccggcatgatgcagccccagatctcgcggccgccgatgccgaacctctcagcgccgccg
gtggcctacccgcaggtcgtgcgcccgccgccggggcagatggtcccgcccatgcggcct
ggaatgccaccgcagatgccaatgcagttccaacgcccgcctgctccgttccctggggga
ccgccgcagcagttcatgaggggaccaccgccgatggggccgccacaggtaaggcctggg
atgccggggccaccaccgcccgggatgaggccagggatgcctccaccgcctttcggacaa
cacaggcctgggatgccgcccccgccgcctgggccgcagcagcctggacagaacccgccg
cagtag

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