Phragmites australis (common reed): 133893514
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Entry
133893514 CDS
T10575
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133893514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133893514
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133893514
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
133893514
NCBI-ProteinID:
XP_062190525
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Position
15:complement(28482871..28488099)
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AA seq
397 aa
AA seq
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MEGSAMPTPTQRRPLLPDGEVVELLWQNGVVVAQAQAQSYQRAFPSDGNTGASGVTGEDA
VAWLPDGGALGGDVYSRVSHSIAQVHGRVGGDTAASARPPATIGAGSKTGGEAGSSFCGS
NLVAASLAPHFDADIDDAALPLPPDGPGARAGASTSSGWGSNALLKRGRDEFDSRSEEQQ
VADVEAVDETRSSRRPASKRRTRAAEVHNLSERRRRDRINEKMRALQELVPHCNKTDKAS
ILDEAIDYLKSLQLQIQIMWMTTGMAPMMHPGAHQLMSPMNMGVNSACMPPVAQVLGQMQ
RVSPFMNNPLPNQMLQIPSPATNAPNVSNQVQTDRIAEPRNPFLYPNGTLATTPQVPSLF
GYGSQMGQRREIQQLLAGTAAPALGAEPPSSFEGTGT
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcagtgcgatgccgacgccgacccagaggagaccgctcctcccggacggcgag
gtcgtggagctgctgtggcagaacggcgttgtcgtggcgcaggcgcaggcgcagtcgtat
cagagggccttcccgagcgacggcaacactggcgcgagcggcgtcaccggggaggacgcg
gtggcgtggctcccggacggcggcgcgctgggcggggacgtctactcgcgggtctcgcac
agcatcgcgcaagtccatgggcgcgtgggcggggacacggccgcgtccgcccggccgccg
gcgacgatcggcgccgggtcgaagaccggcggcgaggccggctcgagcttctgcggcagc
aacctggtggcggcgtcgctggcgccgcatttcgacgccgacatcgacgacgcggcgttg
ccgctgccgccggacgggccaggcgcgcgcgctggcgcgtccacgtcgagcgggtggggc
agcaatgcgctgctcaagaggggccgggacgaattcgatagccgtagcgaggagcagcag
gtcgccgacgtcgaggccgttgacgagacccggtcgtcgaggcggccggcgtcgaagcgc
aggactcgcgccgccgaggttcataatctatcggaaaggagaagaagggaccggatcaac
gaaaagatgcgagcattgcaagaactcgtgcctcactgcaacaagaccgacaaagcgtcc
atactagatgaggcaattgactacttgaagtccctccaattgcaaattcagatcatgtgg
atgactactgggatggcgccgatgatgcaccccggtgctcaccaactcatgtctccgatg
aacatgggagtgaattcagcgtgtatgccacctgtggcgcaagtcctaggtcaaatgcaa
agagtgtcacccttcatgaacaaccctttgccgaaccaaatgcttcagatcccatctcca
gctaccaatgcacccaatgtgtcaaaccaggttcaaaccgatcgcatcgccgagccaagg
aatccctttctttatcctaatggcacactagcaacaacacctcaggtgccaagtttattc
ggctatggatctcaaatgggacaacggagggagattcagcagttactggctggcactgcc
gctccagctttgggggccgagcctccatcttcctttgaaggaaccggaacataa
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