Phragmites australis (common reed): 133896702
Help
Entry
133896702 CDS
T10575
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133896702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133896702
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133896702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_7th
Ig_NUP210_1st
Big_2
Ig_NUP210_5th
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_16th
Ub-RnfH
Motif
Other DBs
NCBI-GeneID:
133896702
NCBI-ProteinID:
XP_062193278
LinkDB
All DBs
Position
17:29134454..29149792
Genome browser
AA seq
1966 aa
AA seq
DB search
MGWPPAAAAVLAVVVALCASAPPVATSMAGGPHMADLSVLLPSRMTKPVEYRLIGGDGCF
SWSWDHHDIISVKPEYNDSSRCSTSARLTSIAPYNGRRETSVYATDIISGITIHCKVFVD
KISRIRIFHHAVKIDLDEVATLRVHAFDDEENVFSSLVGLQFLWQLSPMLLDNSSHHLVH
IPLKETHLSDCSGFCGDMNIRIELEDKNLCSDFFVVKGIEIGQEVVTAQLFEPHFEHVID
TITLTVAEAMSLEPPSPVLMTIGVLVKFKLKVFRQKVAQVVNLPSQYHRWHATNSSVAQV
DSSLGILHALSLGFTEVVVEDTRVSGHEQVSSVHVVIPRSLFLYLIPTMDDSAHLYGTTH
IPSSNVWYVFPGQKYMVLAKAFAEGFDAREISITKENELKMESSTVEFWNLSQVSNDSIG
SYEVLTSRLLSPVSQGKGNLVASLTYRTEASGPAKVLNLLQEVNVCSKVKAFWDEGLENS
NVIHLPWVPGVYQKVELKAIGGCGKTRDDYKLFSSDERVASVSDSCIVRAEKPGQAVIRV
VSVFDFLNFDEIIVEVSTPSMLSILPVFPVEVPVGTRLHTAVALKTFNGHSFSRCDHFNA
FIRWSLLSENESFQILNTTEASSIKDLKHNSRSWGQNGNPCAWISLNASAAGRATIVATF
SFDSDSDFETFTGPIFLKATSKISAYYPLVVLQGGNGNQFGGYWFDLSGIHSRIQNMVSN
SPKELYLVPGSTMNVFLFGGPERWDQVVDFVETVDAIGESKNQIISSAAVQKLSSGLYQV
SCQSKVSYKLLFSRGNMIGKDHPVPAIAKSEFAVVCDFPSAITVIANENENRIDILEAAS
KGDRGPDRLQTSPVVISNGRSIRLAAVGIHENGRFFANSSSLCLKWEVTGCEGLAYFDEV
NAAEMLDESAWERFLVLQNSTGLCTVRATVIGFSTRFAGRTHEEEYTFFQTAHDSLTDAI
QLQIVSSLRVTPEYVLLVFHPEAQESLTVSGGTCSLDASTNDTHVVQVVRHPGKALCSQL
ILGARGSGSAIVTIQDIGLSPRATIHSLVRVANVDWIQIIAEDHMSLMEGSTQDFQILAG
TQDGQVFGDSQYKYMGIELHLGDEILDLISPHELMDEPKFSIKAAKAGITSLYVSTKQHS
GQRVLSQVVRVEVYKPLQIHPEYIYLTPGASFVLSVKGGPKVGVSIEYSSLDMEIVEVQN
ATGKLSAKAVGNSTVRAAVLTNGGTFVCEAFGRVEVDIPVAMILNTQSDRLCVGCSMPIY
PSLPEGDLFSFYETCQSYSWMIADEKVVTFQSAKSWQYRLDQGLYLEGKDYPWFSNGSGN
AFINHVIGRSAGKTKISISVTCDFLLPGTSGSVVSYNVSKTILVVPDPPLALGLPITWLF
PPFYTTAGLLPRSVNSFGEPDSHDLESSVGYSLLRGSGRSGSVIQDSSIIDGSKIRTGES
NAVDCIQAKDHSTGRTEIAACLRVAEVTQVRVAAAESSIQIVYLSVNDRIELDIKYADEL
GYIFSEAHGVAPVKVETNYPDVVSILTPKDGNGTYGTHERFVLQASGHGTALIRLHVNHI
PKKADFIMVSVGAQMYPRDVVLHSGQHLNFTIIGDRMDIRGSGHWLSTNEDVVHVNRITG
EAQARGEGVAEVIFKGSNLKLQTTITVLKVNQIVVDAPAETLTNAAGPPDGYKFSVGFSD
STGHSTGSSVSQINVPFDCQVEPSFVGFVEPWCDHAAKKSYCLFHPYSPAQLWPVKLNPM
EGFLHILVRANLKEDPKVTGSAHALLVKGFYVKEPGKLSLTPSSNHSVITIGGNSDVELF
WSAKDLLSVSRVDTNENKGLPSQIVYRVEALKRQPFSDKVTIVLPATGQTEEVEISYDTG
GETEPSSSGLTTLAVILTCVVVPIATVALFMKSLEKPTRQAASRHTAPTTPAAAGSPAMT
DPASPANGQLSPRTPQPFMEYVRRTIDDTPYYKRDARRRFNPQNTY
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atggggtggccgccggccgctgcggcggttttggcggtggtggtggcactgtgcgcctcg
gcgccgccggtcgctacctccatggcgggcgggccccacatggcggacctgagcgtgctg
ctgccctcgcggatgaccaagcccgttgagtaccgcctcatcggcggggatggctgcttt
tcctggtcatgggatcatcatgatattatttctgttaaaccagagtacaatgacagtagc
agatgctcgactagtgctcgtttgacttcaattgccccttacaacggacggagggagact
tctgtttatgcaactgatattatcagtggaatcacgatacactgcaaagttttcgttgac
aagatctctcgtatcaggattttccaccatgctgtaaaaattgacctagatgaagttgcc
acgttgcgtgttcatgcctttgatgatgaagaaaatgtattctcatcgttggtgggatta
cagtttctgtggcagctttccccgatgttgcttgataacagtagccatcatcttgttcat
attccactgaaagaaacacatttaagtgactgtagtggcttttgtggtgatatgaatata
cgtattgagctagaggacaagaatctttgttcagatttctttgtggtgaagggtattgag
attggccaagaggttgttacagctcagttatttgagcctcactttgagcatgtgattgac
acaattacattgactgttgctgaagctatgtcactagagccaccatcgccagtccttatg
actattggtgttttggtgaagtttaaactcaaggtttttcgacaaaaagttgctcaagtg
gttaatttaccatcgcaatatcatcgatggcatgcgacaaactcttctgtggcccaagtg
gatagttccttgggtatcttacatgccttgagtctgggttttactgaggttgttgttgaa
gacacaagagtttctggtcatgaacaagtatcatctgtacacgttgttattccccggtca
ctcttcctttatctgattcctactatggatgattctgcccatctttatgggacaacacat
attccatcctcaaatgtttggtatgtttttcctggacaaaaatacatggtccttgcgaaa
gcatttgcagagggatttgatgctagggagatatctattacaaaggaaaatgagcttaaa
atggagagtagtacggtggaattctggaacttatcgcaggtgtcaaacgattctataggt
tcctatgaagttctaacttctagattgctaagtcctgtttcccaggggaaaggaaattta
gttgcttccttaacttaccgaacagaggcatctggaccagcaaaggttctcaatcttctg
caagaagttaacgtttgtagtaaggtgaaggcattctgggatgaaggattggagaactcc
aatgttattcaccttccctgggttcctggagtttatcagaaagttgaactgaaggcgatt
ggaggttgtggtaagacacgggatgactacaagttattttcctctgatgaacgtgttgct
tctgtgtctgactcatgtattgtacgtgctgaaaagcctggtcaagctgtcatcagagta
gtttctgtgtttgatttcctgaattttgatgagatcattgttgaagtatccactccttca
atgttgtctatcttgccagtctttcctgtggaggtgcctgttggaacacgacttcatact
gctgtggcactaaaaacatttaatggacactctttctcacgatgtgaccattttaatgct
tttataagatggagtctactatctgagaatgagtcctttcaaattcttaacaccactgag
gcttcgagcatcaaggacctaaaacataattctcgttcttggggtcaaaatggcaatcct
tgtgcctggatatcactaaatgcatctgctgctggtcgagccacaatagttgcaacgttc
tcgtttgattcagattctgattttgagacatttactggacctatttttctgaaggcaact
tcaaaaatttctgcatattatcctcttgtggttcttcaaggggggaatggaaatcaattt
ggtgggtactggtttgacttatctggaatacatagtaggattcagaacatggttagcaac
tctcccaaggagctgtacttagttcctggatcaacaatgaatgtttttctctttggaggg
cctgaacggtgggaccaagtggtcgattttgttgaaacagttgatgctattggtgaatct
aaaaatcaaattattagttctgctgctgtgcaaaagttatctagtggactataccaagta
tcttgccaaagcaaagtgagctataaactgctgttctcacgtggaaacatgattgggaaa
gatcatcccgttcctgctatagccaaatcagagtttgctgttgtttgcgactttccttca
gcaataacagtgatagcgaatgaaaatgaaaatcgaattgatattttggaagccgcaagc
aaaggtgaccgtggtcctgatagactgcaaacatctcctgttgtaatctcaaacggaaga
agcatacgtctagctgctgtgggtattcatgaaaatggaagattttttgccaattcatct
tctctttgcctgaaatgggaagtcactggatgtgaagggcttgcttactttgacgaagtc
aacgctgctgaaatgctagatgagtcagcttgggagaggtttcttgtcctacagaattca
acaggactgtgcactgtgcgtgctacagtcattggcttctctaccagatttgctggccga
actcatgaggaagaatacacgttttttcaaactgcacatgatagtctcacagatgctatt
cagttgcagattgtttcttcattaagagtcactccagagtatgtcttgctagttttccat
cctgaagcacaagaaagcttaactgtcagtggtggaacatgctccctagatgcctctacc
aatgacacacatgtggtgcaagttgttcgacatccaggaaaagccctgtgttctcaattg
attcttggtgctagaggctcaggcagtgctattgtgacaatccaggatattggcctttct
cctagagcaacaattcattctttggttagagttgcaaatgttgattggattcagataatt
gcagaagatcacatgagccttatggaaggaagcacacaagattttcaaattttggctggc
acccaagatgggcaagtatttggagattctcagtacaagtacatgggcattgaattgcat
cttggtgatgagattctggatcttattagtccacatgagttgatggatgagccaaaattt
tcgattaaagctgcaaaagctggcataacatctctttatgttagtactaagcaacactct
ggacaaagagttttgagtcaggttgtaagggtggaagtgtacaaaccactacaaatacat
cctgagtacatctacctcactccaggcgcctcttttgtgctttccgttaaaggtggtccc
aaagttggagtttcaattgagtactcaagtctggacatggaaattgtagaagttcaaaat
gctaccggaaagctatctgcaaaggctgtggggaactctactgtacgtgccgctgttttg
acaaatggaggtaccttcgtctgtgaagcttttggaagagtcgaagtggatatcccagtg
gctatgatattgaatactcaaagtgaccgtctttgtgttggttgtagcatgccaatttat
ccttctctgcctgagggagatctattttccttctatgaaacttgccaaagttacagttgg
atgatagcagatgagaaggtggtaacattccaatcagctaaatcttggcaatacagactt
gatcaagggctatatttggaaggaaaagactatccatggttttccaatggcagtggcaat
gcttttatcaatcatgtgattggaaggtctgctgggaaaaccaaaatttccatttcagtt
acttgtgatttcttgctacctggaacttctggatctgttgtatcttacaatgtctccaag
accattctggtggtaccagatcctcccctagcacttggacttcctataacatggttattc
ccacccttttacactactgcgggccttttgcctagatcagtgaattcatttggggaacca
gattcacatgacctcgagagttctgttgggtactctctgctaaggggcagtggtagaagt
ggttctgtgatccaagattctagcataattgatggaagtaaaattaggactggagagagc
aatgcagttgattgtattcaagcaaaagatcactcaactggaagaacagaaatagcagca
tgtctacgagttgctgaggttacacaagtacgggtcgctgctgcagaatcatcaatccag
attgtctatctctccgtaaatgatagaattgaattggatataaaatatgctgatgaatta
ggttatatcttcagtgaagcacatggagtagcccctgtaaaggttgagacaaattatcct
gatgttgtgtccattctcacgccaaaagatggtaatggtacatatggcacacatgaacgt
tttgtgcttcaggcgagtggtcacgggacagctcttataaggctgcacgtcaaccatatt
cccaagaaagcagatttcataatggtatctgttggtgctcaaatgtatcctagggatgtg
gtccttcattctggccagcacctgaacttcaccattattggagaccgcatggatatacgt
ggatctggtcactggttgagtaccaatgaagacgttgtgcatgtcaatcgaataactggt
gaagcacaggcacgtggtgaaggtgtagcagaagtaatcttcaaaggttcaaatctaaag
ctgcaaacaactatcactgtgctcaaggtgaaccagatagttgttgatgctcctgcggag
acactgactaatgctgctggcccacctgatggatacaagttctctgtaggattcagtgat
tcaactgggcacagcactggatcctctgtgagtcagatcaatgtcccatttgattgccag
gttgaaccttcttttgttgggtttgttgagccatggtgtgatcacgctgcaaagaaatcc
tactgcctatttcatccatattcacctgcacagctgtggcctgtgaagttgaacccgatg
gaaggatttttacacatattagttcgtgcaaatctaaaagaagatccgaaggtgacagga
tctgcacatgctctgcttgtcaaagggttttacgttaaagaacctgggaagttaagtttg
actccaagtagcaatcatagtgtcattactattggtgggaacagtgatgttgagttattc
tggagtgctaaagatttactgtcagttagccgtgttgatacaaatgagaacaagggtctt
cctagtcaaattgtttatcgggtcgaagcactcaaaaggcaacctttctcggacaaggtc
actatagttcttccagccaccggccagactgaagaagttgaaatcagctatgatactggg
ggagaaacagagccatcgtcatcaggccttaccacattagctgttatcctcacatgcgtt
gttgtacccatagctacggttgcgctcttcatgaagtcgctggagaaaccaaccagacag
gcagcatcgagacacacagctcccacaacaccagcagcagcaggcagtcctgcgatgact
gatcctgcgtccccagctaacggtcagctctcacctcgtacaccccagcctttcatggaa
tacgtgaggaggaccatcgacgatacaccgtactacaagcgcgacgccaggaggcgattc
aaccctcagaacacgtactga
DBGET
integrated database retrieval system
