Phragmites australis (common reed): 133899921
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Entry
133899921 CDS
T10575
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133899921
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133899921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133899921
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133899921
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
133899921
NCBI-ProteinID:
XP_062196946
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Position
2:complement(12057531..12060788)
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AA seq
621 aa
AA seq
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MSDGNEFAELLWENGLAVVHGRRKQPQTAFPPFSCAGGTSSRAQEKHPGGDPVALLKTGG
VFGVTGMAPSVHHDFSSGLGATHDNGDLDDTVPWIHYPIIDDDNAAPALEADYSQDFFSE
FQAAAAAATNLSSLPPSNHNAVNSRSTPVATSGKEPEPSKGSHRMSTPTTRPEPQAEFAT
AKEPRPGEGDGGEGLMNFSLFSRPAAMARASLQSAQRPRQGINKVSNVTATTGTHVESTV
VQATSGPRTAPVFTDQRTAWPQPKEVRFACAAAPTAAAGNLQQEMPCDRAGNNITLQKKV
EAWKAPEAAVATSSVCSANDAGIGNDESWRQQKRKSQAECSVSQDDDLEDESCGLIRSSS
RGTKRRRTTEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQV
QQMMYMGSGLCIPPMLLPPTMQHLQMPPMAHFPHLGMGLGYGVGVFDMNSTAGVPLQPMP
GAHFPCSMIPGAAQQGFGIPGRNTLPMFGVSRQAIHPSVSSVQPFSCLAGLPVRPNQAPQ
VSATMANMVQEQQQAMAYQQQQSLNNEASQGATTGGPQLQTILQVENQQFSVPPSAQTES
SQFLDGGSNRTNTTGRNVAET
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacggcaacgagttcgccgagctgctgtgggagaacggactggcggtggtgcat
gggcggcgaaagcagccccagacagccttcccgcctttcagctgcgccggcggcaccagc
agcagagcccaagaaaagcaccccggcggcgaccccgtggcgctgttaaagacgggcggc
gtctttggcgtcacgggcatggccccatcggttcaccacgatttctcttccggtctaggc
gccacccatgacaacggcgatcttgacgacactgtgccatggatccactaccccatcatc
gacgacgacaacgctgcgcctgccttggaagccgactacagccaggatttcttctcggag
ttccaggcagcggcagccgcggcgacgaacctcagctctctgccaccttctaaccacaac
gccgtcaacagcagaagtaccccggttgccaccagcggcaaagaaccagaaccctcaaag
ggaagccaccgcatgtcaactcccaccaccaggcccgagccacaggcggagtttgcgacc
gccaaggagcctcgaccgggcgagggcgacggcggagaaggcttgatgaacttctccctc
ttctctcggccggcagccatggcgcgggcaagcctgcagagcgcgcagaggccacgacaa
ggcataaacaaggtgtccaacgtcactgcaactacaggcacccacgtggagtccacggtt
gtccaggcgaccagcgggccaagaaccgcccctgtgttcacggaccaaaggacggcgtgg
cctcagccaaaagaggtgcggttcgcatgcgcagctgcgccgacggccgcagctggaaac
ctgcagcaagagatgccttgtgacagggctggcaacaacataactctacagaagaaggtt
gaggcgtggaaggcgcctgaggctgcagtcgcgacttcgtcggtctgctccgccaatgat
gctggaattggaaatgatgagtcctggcgccaacagaagaggaaaagccaagctgagtgt
tctgttagtcaagatgatgatcttgaagatgagtcctgtgggttgataagatcttccagc
agaggcacgaagcgcaggcgcacaaccgaggtgcacaatttatcagaaaggaggagaagg
gacaggatcaatgaaaaaatgcgtgcactgcaagagctcattcccaactgcaacaagatt
gacaaagcctcgatgctggatgaagctatagagtacctcaaaacccttcaacttcaagtt
cagcagatgatgtatatgggaagtgggttgtgcattcctccaatgctgctaccaccaacc
atgcagcacctgcaaatgcctccaatggctcatttccctcatctcggcatgggattgggg
tacggggtgggtgtcttcgacatgaacagcaccgcaggggttccacttcagcccatgcct
ggtgctcattttccttgctcgatgatcccaggcgcggcacagcaaggttttggaatacct
ggcagaaacacgttgccgatgtttggagtttccaggcaagcaattcatccgtcagtgtct
agtgtacaacccttttcatgtttggctggtcttcctgttaggccaaaccaggcccctcaa
gtctctgccactatggctaacatggttcaggagcaacagcaagccatggcatatcaacag
cagcaaagtctgaacaacgaagctagtcagggagcaactacaggaggtccacaattacaa
accatccttcaggttgagaaccagcaattcagtgtgcccccttcggcacaaacagaaagc
agtcaatttttggatggtggcagcaacaggactaatactacagggagaaatgtggctgaa
acataa
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