Phragmites australis (common reed): 133912377
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Entry
133912377 CDS
T10575
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133912377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133912377
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133912377
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
ORC-CDC6-like
nSTAND3
ATP-synt_ab
AAA_23
AAA_28
AAA_24
AAA_15
Motif
Other DBs
NCBI-GeneID:
133912377
NCBI-ProteinID:
XP_062211052
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Position
3:15364958..15367819
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AA seq
323 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGQRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVAGVDPIRRDELIKILDIDIAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARANLLTYLKKECEERGALIIYATHIFDGLDDWPTHLVYIAHGKLQLALPLEKVKEMSQ
LSLMRTVETWLRKERDEDRRKRKERNEKGLPEFDKAVEGSRVIGNPAKSAARVVNNGWAA
GRLTSTIAGEENFIFSSNSVLRR
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagccacctctccttcacctacccgggcatcgacggccgc
ccaccgcccggcgcgccgccgctcatcgaggacgtctgcttctccctcgacgccggccag
cgatgcctcctcctcggctccaacggcgcaggcaagacgacgatactgaagattctgggt
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtccgccttccacgac
acggctctcacgtcctccggtgacctctgttacctcggcggcgagtggaggcgagacgtg
gcctttgccggctaccaggtgaatattcagatggacatatcggcggagaagatgattttt
ggtgttgcgggcgttgatccaataaggagagatgaacttatcaagattttagatattgac
attgcctggcgcatgcacaaggcatcagatggtcagaggagacgagtccagatttgcatg
ggacttcttaaacccttcaaggttctccttcttgatgaaatcacagtcgacctggatgtg
ttggcaagagcaaatctgttgacatacctaaagaaggaatgtgaggaacgaggtgcacta
atcatctatgcaacacatatttttgatggccttgatgattggccgacacaccttgtttat
attgctcatgggaagctgcaattggcgcttcctttggaaaaggtgaaagaaatgagccag
ttatctctcatgagaacagtggagacctggttgaggaaagaaagagatgaggataggagg
aagcgaaaggagcgaaacgagaaaggcctcccggagttcgacaaggctgttgagggtagc
cgggttatagggaatccagcaaagagcgctgccagagtagtaaacaacgggtgggcagca
ggacggctcacctcaacgatcgcgggagaggagaacttcattttcagctctaacagcgtc
cttagaagatga
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