Phragmites australis (common reed): 133915263
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Entry
133915263 CDS
T10575
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
133915263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133915263
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133915263
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF4706
TRH
Motif
Other DBs
NCBI-GeneID:
133915263
NCBI-ProteinID:
XP_062214342
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Position
4:complement(3461616..3478252)
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AA seq
743 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPIDLRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFDYIDHLFGLVRPRKLLYMAIDGVAPRAKINQQRSRRF
RAAKDAADAVAEEERLRKEFEAEGRTLVEKEKSEAIDSNVITPGTQFMFVLSTALQYYIQ
LRLNHTLGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEIHFSILREVISMPGQQEKCFLCGQVGHLAAECRGPSQADNAVELPPIHKKKYQF
LNIWVLREYLAKDLEIVDPPFKINFERLVDDFVFICFFVGNDFLPHMPTLEIREGAINLL
MSIYRTEFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQQARENNEEKHKI
QRENSEDHQYVDKVKLGEPGYRERYYAEKFKEEAQSKPIDQVRRDVVQKFVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLNGLPELEITFFLGQPFKPFDQLMGTLPSASSNALPKY
YGDLMNDPNSPLKFFYPKDFEIDMNGKRFAWQGVAKLPFIDESRLLAETRKLEDTLTEEE
KFRNRTMFDILYVREIHPLAAQIAFMYQMYSQSSRTDPYVFPIDPTASGGMNGFLCLSER
NWYSITVVSPVKGFNGIAHNRVLNTTYLNPQYHKHIPEPPEGAIIPAKASGFGSSVRFSL
RRSCTPSGEKFPADQIWQLCWAA
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctaccgctggctggcggaccgctacccgctgacggtgtcggac
gcggaggaggaggagcccgtggagctcgagcccggcgccttcgtccccatcgatctccgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccgtgcttccaccccgaaggccggcccgcgcccaccacctacgacgaggtcttcaag
tcgatttttgattacatcgaccacctcttcggcctcgtccgccccaggaagctcctctac
atggccatcgatggcgttgcgccgagggcgaagataaaccagcagcggtcgaggcggttc
cgggcagcgaaagacgcggccgatgcggtagctgaggaggagaggctgaggaaggaattt
gaggccgaggggaggactttggtcgagaaagagaagtcggaagcaattgactcaaatgtc
ataactcctgggacacagttcatgtttgtattatctacggcgcttcagtactacatacag
ttgagattgaatcatacacttggttggcagtctgtcaaggtaatattgtctgattccaat
gtccctggggagggagagcataaaattatgtcatacatccgtctgcagcgcaatcttcca
ggctttgatccaaatacacgccattgcttatatggcctggatgctgatttgattatgctt
gctctggcaactcacgagatccacttctccattttaagagaggtgatctccatgccaggg
caacaagaaaaatgttttctgtgcggtcaagttgggcatttggctgctgaatgcagaggc
cctagtcaggctgataatgctgtggagctacctcctattcataaaaagaagtaccagttt
cttaacatctgggtgctgcgtgaatacctggcaaaggatttggaaattgttgatcctccc
ttcaagataaattttgaacgccttgtggatgattttgtgtttatctgtttctttgttggg
aatgactttctgcctcacatgccaactttggaaattcgtgagggtgccattaatcttctc
atgagtatctacaggacggagttcacatcaatgggtggttacctcactgatgggggtgag
gttttattggaccgagtggaacatttcattcagtctgttgctgtccacgaagaacaaatt
ttccagaagcgtgcacgtattcaacaggcacgcgagaacaatgaagagaagcataaaata
caaagagaaaactctgaggatcatcaatatgtagacaaggtaaaattaggagagccagga
tacagggagaggtactatgctgagaagttcaaagaagaagcacaatcaaaacccattgat
caagttcggagagatgttgtacagaaatttgtagaaggtctttgctgggttatgagatac
tactatcaaggtgtttgttcatggcaatggttctatccttatcattatgcgccttttgcg
tctgacctgaatggcttgcctgaattggagataacctttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactaccatctgcaagctccaatgcactgccaaagtac
tatggagatcttatgaatgatccgaattcaccgttgaagtttttctaccctaaagatttt
gagatagacatgaatggaaaacgttttgcatggcagggtgttgcaaaattgcctttcatt
gatgaaagtcgtctgcttgcggagacaagaaaacttgaagatacattgacagaagaagag
aaattcaggaacagaacaatgtttgacatactttatgtgcgggaaattcatccattggct
gctcagattgccttcatgtatcagatgtactctcaatcatcaagaacagatccttatgtt
tttcccattgaccctactgctagtggtggaatgaatggattcctttgtttatctgaaagg
aactggtatagcatcactgtggtgtctccagttaaggggtttaatggcattgcccataac
agagttttgaacacgacctatctgaatcctcaatatcataaacacatcccggagcctcca
gagggggccatcatacctgcaaaggcctcaggttttgggagctctgtcaggttctctctt
aggagaagctgcacaccgtctggtgaaaaattccctgcagatcaaatctggcagctctgc
tgggctgcttga
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