Phragmites australis (common reed): 133920962
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Entry
133920962 CDS
T10575
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133920962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133920962
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133920962
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
AAA
AAA_28
SMC_N
AAA_15
NACHT
AAA_25
AAA_23
AAA_5
AAA_18
SRP54
AAA_22
AAA_30
Zeta_toxin
PduV-EutP
AAA_24
AAA_33
Arf
AAA_16
AAA_14
Rad17
Motif
Other DBs
NCBI-GeneID:
133920962
NCBI-ProteinID:
XP_062221610
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All DBs
Position
6:1354668..1358402
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AA seq
295 aa
AA seq
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MAGGEGNGDEGWRRSGIEVSALQFGYDGQPPLFARFNLRIAPGSRCLLVGANGSGKTTLL
KILAGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRTIGSAGDVPLQGDFSAE
HMIFGVDGVDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITV
DLDVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDVAYIQEGELRKSAKYSDIE
ELKSAKNLLSVVESWLRSETKLPKKEPPRSETQPRRSSPLDASPFRSSRHMAYYR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgagggaaacggagacgaagggtggcggaggagtggcatcgaggtgagc
gccctccagttcggctacgacgggcagccgccgctcttcgcgcgcttcaacctccgcatc
gcccccggctcccgctgcctcctcgtcggcgccaatggatcaggcaagaccacactcttg
aagattcttgcaggaaagcatatggttggaggaagggatgttgtccgtgttctcaatggt
tcagcttttcatgatacacagctcgtgtgcaatggtgacctttcatacttgggtggttct
tggagtcggactattggttcagctggtgatgttccactgcaaggtgacttctctgctgag
cacatgatttttggagttgacggggttgatcctgttaggcgagagaagctaattgatctg
ctggacattgatctgcaatggcgcatgcataaagtttcagatggacagcgccgcagggta
caaatctgcatgggtcttcttcatccatacaaggtgctcctacttgatgaaatcaccgtt
gatctggatgttgtgaccagaatggatctccttgacttctttaaggaagagtgtgaacag
agagaagccaccattgtgtacgccactcatatattcgatggactggagacatgggctact
gacgttgcatacatccaggaaggcgaattgagaaaatctgcaaaatactcggacattgaa
gagctgaagagtgccaaaaacttgctgtcagtagttgagtcctggctccgatctgagacc
aaactcccaaagaaggaacctccacgttctgagacacagcccagacgctcctcaccgttg
gatgcttcccctttccgttcgtcgcgccacatggcctactaccgttga
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