Phragmites australis (common reed): 133928401
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Entry
133928401 CDS
T10575
Name
(RefSeq) transcription factor APG-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133928401
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133928401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133928401
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133928401
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
133928401
NCBI-ProteinID:
XP_062230702
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All DBs
Position
9:2949502..2954559
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AA seq
623 aa
AA seq
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MNNSSRVSYRCQSQTAHHLVCYRCVSIGWPAAWVAVAPTCQLLANPPLLLNGDTSCWHAS
GASLFLNSSPASTGLPCSISHTAAVLAAALPLAPAPAPTCTADAKNQPAAGTGCSLCSIH
LHLSPHQPPSLHTIGCQFLPSGPGDELAELLWHNGPARRRAPHFPPAPFQPFTCSTAGSS
RAHELKRHAVADAKAGAFMSMTSVPLGAASGMHDVGLPVQDDDGDAVPWLHCPVADDDDS
DTAPLPTDFCAGLLSEYSALPAAPAASHGAVVSTTRAVMLETAAKQPQPSAAGGGEGVMN
FTFFSRPLQRPQASAAASPSYPVESTVVQTAANRLRSTPLFSEQRMAWLQPPKGPRTTDA
AAAPQSPLPPDHHHVETAAMVTQQRLQPEARAPDAAAAVTTSSVCSGNGDRTQAKRSSHL
PAECSFSQDEDIDDEPGAMRRSATRSTKRGRTAEVHNLSERRRRDRINEKMRALQELIPN
CNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGLWVPPMLLPAAAMQHLQMPPMAHFPHLS
MGLGFNMGAAFDMVPRLAGAQFPCHAAPMAMPPGTMFGVPGQATTSPAAFAHMTSTAAAT
DERMEAAAPARGGACGHPINALP
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacaattcctcgcgagtttcttacagatgtcagagtcagacggcccatcacttggtg
tgttaccgttgtgtctctatcggatggccggccgcatgggtcgccgtcgcccccacctgt
cagcttcttgcaaacccaccattgctcctgaacggcgacacctcctgctggcacgctagt
ggcgcgtcgctcttccttaactcctcgcccgcctctaccggtctaccctgctccatctca
cacacagcagctgtactagctgccgcgctaccactagctcctgctcctgctcctacttgc
actgctgacgccaagaaccaaccagccgcagggaccggctgcagcttgtgctccatccat
ctccacctgtcgccgcaccagccaccctccctccatacaatcggatgtcagttcttgccg
agcgggccgggcgacgagctggccgagctgctgtggcacaacgggccggcgcggaggagg
gcgccgcacttcccgccggcgccgttccagcccttcacctgcagcaccgccggcagcagt
agggcccacgagctcaagcgccacgccgttgcggacgccaaggcgggcgcgttcatgagc
atgacctccgtgcccctgggcgcggcctcggggatgcacgacgtcggcctccccgtccaa
gacgacgacggcgacgccgtaccgtggctgcattgccccgtcgctgacgacgacgacagt
gatacggcgccgctgcccacggacttctgcgccggcttgctgtccgagtactcggcactc
ccggccgcgccggcggcctcccacggcgcggttgtctcgaccacacgcgccgtgatgctg
gagactgcggccaaacagccccagccgagcgccgccggcggaggcgagggcgtcatgaac
ttcacgttcttctcgaggccgctgcagcggccgcaggcgtccgccgccgcgtctccgagc
tacccagtcgagtccacggtagtgcagacggcggcgaatcggctacgaagcaccccgttg
ttctcggagcagagaatggcatggctgcagccgcccaaggggccgcgcaccacggatgca
gctgctgctccccagtcgcctctgcccccagatcaccaccatgttgaaactgccgccatg
gtaactcaacaaaggttgcaaccagaagcaagggctcccgatgcggcggcggcggtgacg
acctcgtcggtctgttccggcaacggtgatcgtacccaggcgaagaggagcagccacctg
cccgcagagtgctcgttcagccaggacgaggacatcgacgacgagccaggcgcgatgagg
aggtcggcgacgcggagcaccaagcgcggccgcactgccgaggtgcacaacctatcggag
aggaggagacgggaccggatcaacgagaagatgcgcgccctgcaggagctcatccccaac
tgcaacaagattgacaaggcgtcgatgctggaggaggccatcgagtacctgaaaactctg
cagctccaagtgcagatgatgtcgatggggaccgggctgtgggtgccgccgatgctgctg
ccggcggcggcgatgcagcacctgcagatgcctcccatggcgcatttcccccacctcagc
atggggctggggttcaacatgggcgcggcgttcgacatggtcccgcgcctcgctggcgcg
cagttcccttgccacgcggcgccgatggcaatgccgcccggcacgatgttcggcgtgccc
ggtcaggcaacgacgtcaccggccgcgttcgctcacatgaccagcaccgccgccgcgacg
gacgaacggatggaagctgctgctcctgcacggggaggcgcttgcggccatcctatcaac
gcactcccatag
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